{
"cells": [
{
"cell_type": "code",
"execution_count": 1,
"id": "0",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:23.195294Z",
"iopub.status.busy": "2026-06-30T22:32:23.195083Z",
"iopub.status.idle": "2026-06-30T22:32:23.199853Z",
"shell.execute_reply": "2026-06-30T22:32:23.198962Z"
},
"tags": [
"hide-in-docs"
]
},
"outputs": [],
"source": [
"# Check whether easydiffraction is installed; install it if needed.\n",
"# Required for remote environments such as Google Colab.\n",
"import importlib.util\n",
"\n",
"if importlib.util.find_spec('easydiffraction') is None:\n",
" %pip install easydiffraction==0.19.1"
]
},
{
"cell_type": "markdown",
"id": "1",
"metadata": {},
"source": [
"# Pair Distribution Function: NaCl, XRD\n",
"\n",
"This example demonstrates a pair distribution function (PDF) analysis\n",
"of NaCl, based on data collected from an X-ray powder diffraction\n",
"experiment.\n",
"\n",
"The dataset is taken from:\n",
"https://github.com/diffpy/add2019-diffpy-cmi/tree/master"
]
},
{
"cell_type": "markdown",
"id": "2",
"metadata": {},
"source": [
"## π οΈ Import Library"
]
},
{
"cell_type": "code",
"execution_count": 2,
"id": "3",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:23.201644Z",
"iopub.status.busy": "2026-06-30T22:32:23.201429Z",
"iopub.status.idle": "2026-06-30T22:32:26.138469Z",
"shell.execute_reply": "2026-06-30T22:32:26.137118Z"
}
},
"outputs": [],
"source": [
"import easydiffraction as edi"
]
},
{
"cell_type": "markdown",
"id": "4",
"metadata": {},
"source": [
"## π¦ Define Project"
]
},
{
"cell_type": "markdown",
"id": "5",
"metadata": {},
"source": [
"### Create Project"
]
},
{
"cell_type": "code",
"execution_count": 3,
"id": "6",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:26.140328Z",
"iopub.status.busy": "2026-06-30T22:32:26.140001Z",
"iopub.status.idle": "2026-06-30T22:32:26.358336Z",
"shell.execute_reply": "2026-06-30T22:32:26.357487Z"
}
},
"outputs": [],
"source": [
"project = edi.Project(name='nacl_xray_pdf')"
]
},
{
"cell_type": "markdown",
"id": "7",
"metadata": {},
"source": [
"### Set Plotting Engine"
]
},
{
"cell_type": "code",
"execution_count": 4,
"id": "8",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:26.360426Z",
"iopub.status.busy": "2026-06-30T22:32:26.360247Z",
"iopub.status.idle": "2026-06-30T22:32:26.363036Z",
"shell.execute_reply": "2026-06-30T22:32:26.362173Z"
}
},
"outputs": [],
"source": [
"# Keep the auto-selected engine. Alternatively, you can uncomment the\n",
"# line below to explicitly set the engine to the required one.\n",
"# project.rendering_plot.type = 'plotly'"
]
},
{
"cell_type": "code",
"execution_count": 5,
"id": "9",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:26.364753Z",
"iopub.status.busy": "2026-06-30T22:32:26.364593Z",
"iopub.status.idle": "2026-06-30T22:32:26.367413Z",
"shell.execute_reply": "2026-06-30T22:32:26.366667Z"
}
},
"outputs": [],
"source": [
"# Set global plot range for plots\n",
"project.rendering_plot.plotter.x_min = 2.0\n",
"project.rendering_plot.plotter.x_max = 30.0"
]
},
{
"cell_type": "markdown",
"id": "10",
"metadata": {},
"source": [
"### Add Structure"
]
},
{
"cell_type": "code",
"execution_count": 6,
"id": "11",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:26.369339Z",
"iopub.status.busy": "2026-06-30T22:32:26.369080Z",
"iopub.status.idle": "2026-06-30T22:32:26.373439Z",
"shell.execute_reply": "2026-06-30T22:32:26.372664Z"
}
},
"outputs": [],
"source": [
"project.structures.create(name='nacl')"
]
},
{
"cell_type": "code",
"execution_count": 7,
"id": "12",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:26.375337Z",
"iopub.status.busy": "2026-06-30T22:32:26.375130Z",
"iopub.status.idle": "2026-06-30T22:32:26.382586Z",
"shell.execute_reply": "2026-06-30T22:32:26.381403Z"
}
},
"outputs": [],
"source": [
"project.structures['nacl'].space_group.name_h_m = 'F m -3 m'\n",
"project.structures['nacl'].space_group.coord_system_code = '1'\n",
"project.structures['nacl'].cell.length_a = 5.62\n",
"project.structures['nacl'].atom_sites.create(\n",
" id='Na',\n",
" type_symbol='Na',\n",
" fract_x=0,\n",
" fract_y=0,\n",
" fract_z=0,\n",
" adp_iso=1.0,\n",
")\n",
"project.structures['nacl'].atom_sites.create(\n",
" id='Cl',\n",
" type_symbol='Cl',\n",
" fract_x=0.5,\n",
" fract_y=0.5,\n",
" fract_z=0.5,\n",
" adp_iso=1.0,\n",
")"
]
},
{
"cell_type": "markdown",
"id": "13",
"metadata": {},
"source": [
"### Display Structure"
]
},
{
"cell_type": "code",
"execution_count": 8,
"id": "14",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:26.384167Z",
"iopub.status.busy": "2026-06-30T22:32:26.383965Z",
"iopub.status.idle": "2026-06-30T22:32:27.073077Z",
"shell.execute_reply": "2026-06-30T22:32:27.072343Z"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"\u001b[1;36mStructure π§© \u001b[0m\u001b[32m'nacl'\u001b[0m\u001b[1;36m \u001b[0m\u001b[1;36m(\u001b[0m\u001b[1;36mAtom view type: \u001b[0m\u001b[32m'covalent'\u001b[0m\u001b[1;36m)\u001b[0m\n"
]
},
{
"data": {
"text/html": [
"
\n",
"
\n",
"
Loading plotβ¦
\n",
"
\n",
"
\n",
"
\n",
"
drag = rotate
wheel = zoom
right-drag = pan
\n",
"
\n",
"
\n",
"\n",
"\n",
"\n",
""
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"project.display.structure(struct_name='nacl')"
]
},
{
"cell_type": "markdown",
"id": "15",
"metadata": {},
"source": [
"### Add Experiment"
]
},
{
"cell_type": "code",
"execution_count": 9,
"id": "16",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:27.074592Z",
"iopub.status.busy": "2026-06-30T22:32:27.074432Z",
"iopub.status.idle": "2026-06-30T22:32:27.365233Z",
"shell.execute_reply": "2026-06-30T22:32:27.363536Z"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"\u001b[1;36mGetting data\u001b[0m\u001b[1;36m...\u001b[0m\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"Data \u001b[32m'meas-nacl-pdf'\u001b[0m: NaCl, PDF\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"β
Data \u001b[32m'meas-nacl-pdf'\u001b[0m downloaded to \u001b[32m'../../../data/meas-nacl-pdf.gr'\u001b[0m\n"
]
}
],
"source": [
"data_path = edi.download_data('meas-nacl-pdf', destination='data')"
]
},
{
"cell_type": "code",
"execution_count": 10,
"id": "17",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:27.367605Z",
"iopub.status.busy": "2026-06-30T22:32:27.367352Z",
"iopub.status.idle": "2026-06-30T22:32:27.939333Z",
"shell.execute_reply": "2026-06-30T22:32:27.938230Z"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"β οΈ No uncertainty (sy) column provided. Defaulting to 0.03. \n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"\u001b[1;36mData loaded successfully\u001b[0m\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"Experiment π¬ \u001b[32m'xray_pdf'\u001b[0m. Number of data points: \u001b[1;36m5000\u001b[0m.\n"
]
}
],
"source": [
"project.experiments.add_from_data_path(\n",
" name='xray_pdf',\n",
" data_path=data_path,\n",
" sample_form='powder',\n",
" beam_mode='constant wavelength',\n",
" radiation_probe='xray',\n",
" scattering_type='total',\n",
")"
]
},
{
"cell_type": "code",
"execution_count": 11,
"id": "18",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:27.940969Z",
"iopub.status.busy": "2026-06-30T22:32:27.940786Z",
"iopub.status.idle": "2026-06-30T22:32:27.949061Z",
"shell.execute_reply": "2026-06-30T22:32:27.948242Z"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"\u001b[1;36mPeak types\u001b[0m\n"
]
},
{
"data": {
"text/html": [
" | | Type | Description |
|---|
| 1 | * | gaussian-damped-sinc | Total-scattering Gaussian-damped sinc profile for PDF analysis. |
|---|
"
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"project.experiments['xray_pdf'].peak.show_supported()"
]
},
{
"cell_type": "code",
"execution_count": 12,
"id": "19",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:27.950691Z",
"iopub.status.busy": "2026-06-30T22:32:27.950515Z",
"iopub.status.idle": "2026-06-30T22:32:27.956249Z",
"shell.execute_reply": "2026-06-30T22:32:27.955292Z"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"\u001b[1;36mPeak profile type for experiment \u001b[0m\u001b[32m'xray_pdf'\u001b[0m\u001b[1;36m changed to\u001b[0m\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"gaussian-damped-sinc\n"
]
}
],
"source": [
"project.experiments['xray_pdf'].peak.type = 'gaussian-damped-sinc'"
]
},
{
"cell_type": "code",
"execution_count": 13,
"id": "20",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:27.957924Z",
"iopub.status.busy": "2026-06-30T22:32:27.957696Z",
"iopub.status.idle": "2026-06-30T22:32:27.962517Z",
"shell.execute_reply": "2026-06-30T22:32:27.961702Z"
}
},
"outputs": [],
"source": [
"project.experiments['xray_pdf'].peak.damp_q = 0.03\n",
"project.experiments['xray_pdf'].peak.broad_q = 0\n",
"project.experiments['xray_pdf'].peak.cutoff_q = 21\n",
"project.experiments['xray_pdf'].peak.sharp_delta_1 = 0\n",
"project.experiments['xray_pdf'].peak.sharp_delta_2 = 5\n",
"project.experiments['xray_pdf'].peak.damp_particle_diameter = 0"
]
},
{
"cell_type": "code",
"execution_count": 14,
"id": "21",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:27.964320Z",
"iopub.status.busy": "2026-06-30T22:32:27.964086Z",
"iopub.status.idle": "2026-06-30T22:32:27.968079Z",
"shell.execute_reply": "2026-06-30T22:32:27.967310Z"
}
},
"outputs": [],
"source": [
"project.experiments['xray_pdf'].linked_structures.create(structure_id='nacl', scale=0.5)"
]
},
{
"cell_type": "markdown",
"id": "22",
"metadata": {},
"source": [
"## π Perform Analysis"
]
},
{
"cell_type": "markdown",
"id": "23",
"metadata": {},
"source": [
"### Set Free Parameters"
]
},
{
"cell_type": "code",
"execution_count": 15,
"id": "24",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:27.969720Z",
"iopub.status.busy": "2026-06-30T22:32:27.969568Z",
"iopub.status.idle": "2026-06-30T22:32:27.972662Z",
"shell.execute_reply": "2026-06-30T22:32:27.971863Z"
}
},
"outputs": [],
"source": [
"project.structures['nacl'].cell.length_a.free = True\n",
"project.structures['nacl'].atom_sites['Na'].adp_iso.free = True\n",
"project.structures['nacl'].atom_sites['Cl'].adp_iso.free = True"
]
},
{
"cell_type": "code",
"execution_count": 16,
"id": "25",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:27.974074Z",
"iopub.status.busy": "2026-06-30T22:32:27.973918Z",
"iopub.status.idle": "2026-06-30T22:32:27.977515Z",
"shell.execute_reply": "2026-06-30T22:32:27.976687Z"
}
},
"outputs": [],
"source": [
"project.experiments['xray_pdf'].linked_structures['nacl'].scale.free = True\n",
"project.experiments['xray_pdf'].peak.damp_q.free = True\n",
"project.experiments['xray_pdf'].peak.sharp_delta_2.free = True"
]
},
{
"cell_type": "markdown",
"id": "26",
"metadata": {},
"source": [
"### Run Fitting"
]
},
{
"cell_type": "code",
"execution_count": 17,
"id": "27",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:27.978969Z",
"iopub.status.busy": "2026-06-30T22:32:27.978827Z",
"iopub.status.idle": "2026-06-30T22:32:40.242116Z",
"shell.execute_reply": "2026-06-30T22:32:40.241304Z"
}
},
"outputs": [
{
"data": {
"text/html": [],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
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"\n",
"(function() {\n",
" const button = document.getElementById('ed-fit-stop-0dd15fa8936f48ac93dd7efb46e2dd4b-button');\n",
" const status = document.getElementById('ed-fit-stop-0dd15fa8936f48ac93dd7efb46e2dd4b-status');\n",
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"\n",
" function pageConfig() {\n",
" const element = document.getElementById('jupyter-config-data');\n",
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" return {};\n",
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"\n",
" function baseUrl(config) {\n",
" const configured = config.baseUrl || config.base_url ||\n",
" (window.Jupyter && Jupyter.notebook && Jupyter.notebook.base_url);\n",
" if (configured) {\n",
" return configured.endsWith('/') ? configured : configured + '/';\n",
" }\n",
" const markers = ['/lab/', '/notebooks/', '/tree/'];\n",
" for (const marker of markers) {\n",
" const index = window.location.pathname.indexOf(marker);\n",
" if (index >= 0) {\n",
" return window.location.pathname.slice(0, index + 1);\n",
" }\n",
" }\n",
" return '/';\n",
" }\n",
"\n",
" function token(config) {\n",
" return config.token || new URLSearchParams(window.location.search).get('token') || '';\n",
" }\n",
"\n",
" function cookie(name) {\n",
" const prefix = name + '=';\n",
" for (const part of document.cookie.split(';')) {\n",
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" return decodeURIComponent(trimmed.slice(prefix.length));\n",
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" }\n",
" return '';\n",
" }\n",
"\n",
" function notebookPath() {\n",
" const decoded = decodeURIComponent(window.location.pathname);\n",
" const markers = ['/lab/tree/', '/notebooks/', '/tree/'];\n",
" for (const marker of markers) {\n",
" const index = decoded.indexOf(marker);\n",
" if (index >= 0) {\n",
" return decoded.slice(index + marker.length);\n",
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" return '';\n",
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" url.searchParams.set('token', authToken);\n",
" }\n",
" const response = await fetch(url, {credentials: 'same-origin'});\n",
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" return '';\n",
" }\n",
" const sessions = await response.json();\n",
" const path = notebookPath();\n",
" const session = sessions.find((item) => item.path === path) || sessions[0];\n",
" return session && session.kernel ? session.kernel.id : '';\n",
" }\n",
"\n",
" async function interruptKernel(config, resolvedKernelId) {\n",
" const url = new URL(\n",
" baseUrl(config) + 'api/kernels/' + resolvedKernelId + '/interrupt',\n",
" window.location.origin\n",
" );\n",
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" if (authToken) {\n",
" url.searchParams.set('token', authToken);\n",
" }\n",
" const xsrfToken = cookie('_xsrf');\n",
" const headers = {};\n",
" if (xsrfToken) {\n",
" headers['X-XSRFToken'] = xsrfToken;\n",
" }\n",
" const response = await fetch(url, {\n",
" method: 'POST',\n",
" credentials: 'same-origin',\n",
" headers: headers\n",
" });\n",
" return response.ok;\n",
" }\n",
"\n",
" button.addEventListener('click', async function() {\n",
" button.disabled = true;\n",
" setStatus('Stopping...');\n",
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" const resolvedKernelId = kernelId || await kernelFromSessions(config);\n",
" if (!resolvedKernelId) {\n",
" throw new Error('Could not resolve the current kernel id.');\n",
" }\n",
" const interrupted = await interruptKernel(config, resolvedKernelId);\n",
" if (!interrupted) {\n",
" throw new Error('Jupyter Server rejected the interrupt request.');\n",
" }\n",
" setStatus('Interrupt sent...');\n",
" } catch (error) {\n",
" button.disabled = false;\n",
" setStatus('Use Kernel > Interrupt to stop this fit.');\n",
" }\n",
" });\n",
"})();\n"
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"\u001b[1;36mStandard fitting\u001b[0m\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"π Using experiment π¬ \u001b[32m'xray_pdf'\u001b[0m for \u001b[32m'single'\u001b[0m fitting\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"π Starting fit process with \u001b[32m'lmfit \u001b[0m\u001b[32m(\u001b[0m\u001b[32mleastsq\u001b[0m\u001b[32m)\u001b[0m\u001b[32m'\u001b[0m\u001b[33m...\u001b[0m\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"π Goodness-of-fit progress:\n"
]
},
{
"data": {
"text/html": [
" | iteration | time (s) | ΟΒ² | change / status |
|---|
| 1 | 1 | 0.26 | 1023.73 | |
|---|
| 2 | 10 | 2.33 | 29.94 | 97.1% β |
|---|
| 3 | 17 | 4.01 | 4.53 | 84.9% β |
|---|
| 4 | 24 | 5.59 | 1.52 | 66.4% β |
|---|
| 5 | 31 | 7.10 | 1.48 | 3.2% β |
|---|
| 6 | 53 | 11.91 | 1.48 | |
|---|
"
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"π Best goodness-of-fit \u001b[1m(\u001b[0mreduced ΟΒ²\u001b[1m)\u001b[0m is \u001b[1;36m1.48\u001b[0m at iteration \u001b[1;36m52\u001b[0m\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"β
Fitting complete.\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"βοΈ Settings used:\n"
]
},
{
"data": {
"text/html": [
" | Name | Value | Description |
|---|
| 1 | max_iterations | 1000 | Maximum solver iterations. |
|---|
"
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"π Least-squares fit results:\n"
]
},
{
"data": {
"text/html": [
" | Metric | Value |
|---|
| 1 | π§ͺ Minimizer | lmfit (leastsq) |
|---|
| 2 | β
Overall status | success |
|---|
| 3 | β±οΈ Fitting time (seconds) | 11.91 |
|---|
| 4 | π Iterations | 50 |
|---|
| 5 | π Goodness-of-fit (reduced ΟΒ²) | 1.48 |
|---|
| 6 | π R-factor (Rf, %) | 11.03 |
|---|
| 7 | π R-factor squared (RfΒ², %) | 11.38 |
|---|
| 8 | π Weighted R-factor (wR, %) | 11.38 |
|---|
"
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"π Refined parameters:\n"
]
},
{
"data": {
"text/html": [
" | datablock | category | entry | parameter | units | start | value | s.u. | change |
|---|
| 1 | nacl | cell | | length_a | Γ
| 5.6200 | 5.6018 | 0.0001 | 0.32 % β |
|---|
| 2 | nacl | atom_site | Na | adp_iso | Γ
Β² | 1.0000 | 1.1053 | 0.0077 | 10.53 % β |
|---|
| 3 | nacl | atom_site | Cl | adp_iso | Γ
Β² | 1.0000 | 0.5707 | 0.0032 | 42.93 % β |
|---|
| 4 | xray_pdf | linked_structure | nacl | scale | | 0.5000 | 0.1809 | 0.0005 | 63.81 % β |
|---|
| 5 | xray_pdf | peak | | damp_q | Γ
β»ΒΉ | 0.0300 | 0.0606 | 0.0001 | 102.13 % β |
|---|
| 6 | xray_pdf | peak | | sharp_delta_2 | Γ
Β² | 5.0000 | 3.5041 | 0.0667 | 29.92 % β |
|---|
"
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"text/html": [
" β’ start = parameter value before refinement
β’ value = refined value from least-squares minimization
β’ s.u. = standard uncertainty (one sigma), from the covariance matrix
β’ change = relative change from start, in %; β = increase, β = decrease
"
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
},
{
"data": {
"text/html": [
"\n",
"\n",
""
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"project.analysis.fit()\n",
"project.display.fit.results()\n",
"project.display.fit.correlations()"
]
},
{
"cell_type": "markdown",
"id": "28",
"metadata": {},
"source": [
"### Display Pattern"
]
},
{
"cell_type": "code",
"execution_count": 18,
"id": "29",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:40.243735Z",
"iopub.status.busy": "2026-06-30T22:32:40.243575Z",
"iopub.status.idle": "2026-06-30T22:32:40.285715Z",
"shell.execute_reply": "2026-06-30T22:32:40.284920Z"
}
},
"outputs": [
{
"data": {
"text/html": [
""
],
"text/plain": [
""
]
},
"metadata": {},
"output_type": "display_data"
}
],
"source": [
"project.display.pattern(expt_name='xray_pdf')"
]
},
{
"cell_type": "markdown",
"id": "30",
"metadata": {},
"source": [
"## πΎ Save Project"
]
},
{
"cell_type": "code",
"execution_count": 19,
"id": "31",
"metadata": {
"execution": {
"iopub.execute_input": "2026-06-30T22:32:40.288021Z",
"iopub.status.busy": "2026-06-30T22:32:40.287783Z",
"iopub.status.idle": "2026-06-30T22:32:40.674841Z",
"shell.execute_reply": "2026-06-30T22:32:40.674013Z"
}
},
"outputs": [
{
"name": "stdout",
"output_type": "stream",
"text": [
"\u001b[1;36mSaving project π¦ \u001b[0m\u001b[32m'nacl_xray_pdf'\u001b[0m\u001b[1;36m to \u001b[0m\u001b[32m'../../../projects/pdf-nacl-xrd'\u001b[0m\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"βββ π project.edi\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"βββ π structures/\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"β βββ π nacl.edi\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"βββ π experiments/\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"β βββ π xray_pdf.edi\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"βββ π analysis/\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"β βββ π analysis.edi\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
"βββ π reports/\n"
]
},
{
"name": "stdout",
"output_type": "stream",
"text": [
" βββ π nacl_xray_pdf.html\n"
]
}
],
"source": [
"project.save_as(dir_path='projects/pdf-nacl-xrd')"
]
}
],
"metadata": {
"jupytext": {
"cell_metadata_filter": "-all",
"main_language": "python",
"notebook_metadata_filter": "-all"
},
"language_info": {
"codemirror_mode": {
"name": "ipython",
"version": 3
},
"file_extension": ".py",
"mimetype": "text/x-python",
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.14.5"
}
},
"nbformat": 4,
"nbformat_minor": 5
}