analysis
Modules:
| Name | Description |
|---|---|
analysis |
|
calculators |
|
categories |
|
enums |
Enumeration types used by analysis components. |
fit_helpers |
|
fitting |
|
minimizers |
|
sequential |
Sequential fitting infrastructure: template, worker, CSV, recovery. |
Classes
Modules
analysis
Classes:
| Name | Description |
|---|---|
UndoFitOutcome |
Summary of one undo-fit operation. |
AnalysisDisplay |
Display helper - parameter tables, CIF, and fit results. |
Analysis |
High-level orchestration of analysis tasks for a Project. |
Classes
UndoFitOutcome(restored_parameter_names, cleared_fit_result, cleared_sidecar, was_no_op)
dataclass
Summary of one undo-fit operation.
Attributes:
| Name | Type | Description |
|---|---|---|
restored_parameter_names |
tuple[str, ...]
|
Unique names of parameters restored to pre-fit values. |
cleared_fit_result |
bool
|
Whether a committed fit-result projection was cleared. |
cleared_sidecar |
bool
|
Whether in-memory sidecar arrays were cleared. |
was_no_op |
bool
|
Whether the call found no fit to undo. |
AnalysisDisplay(analysis)
Display helper - parameter tables, CIF, and fit results.
Accessed via analysis.display.
Methods:
| Name | Description |
|---|---|
help |
Print available analysis-display methods. |
all_params |
Print all parameters for structures and experiments. |
fittable_params |
Print all fittable parameters. |
free_params |
Print only currently free (varying) parameters. |
how_to_access_parameters |
Show Python access paths for all parameters. |
parameter_cif_uids |
Show CIF unique IDs for all parameters. |
constraints |
Print a table of all user-defined symbolic constraints. |
fit_results |
Display a summary of the fit results. |
as_cif |
Render the analysis section as CIF in console. |
Functions
help()
Print available analysis-display methods.
all_params()
Print all parameters for structures and experiments.
fittable_params()
Print all fittable parameters.
free_params()
Print only currently free (varying) parameters.
how_to_access_parameters()
Show Python access paths for all parameters.
The output explains how to reference specific parameters in code.
parameter_cif_uids()
Show CIF unique IDs for all parameters.
The output explains which unique identifiers are used when creating CIF-based constraints.
constraints()
Print a table of all user-defined symbolic constraints.
fit_results()
Display a summary of the fit results.
Renders the fit quality metrics (reduced χ², R-factors) and a table of fitted parameters with their starting values, final values, and uncertainties.
This method should be called after :meth:Analysis.fit
completes. If no fit has been performed yet, a warning is
logged.
as_cif()
Render the analysis section as CIF in console.
Analysis(project)
High-level orchestration of analysis tasks for a Project.
This class wires calculators and minimizers, exposes a compact interface for parameters, constraints and results, and coordinates computations across the project's structures and experiments.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
project
|
object
|
The project that owns models and experiments. |
required |
Methods:
| Name | Description |
|---|---|
help |
Print a summary of analysis properties and methods. |
fit |
Execute fitting for the currently selected fitting mode. |
undo_fit |
Roll back the latest fit output and scalar state. |
show_as_cif |
Pretty-print the analysis section as CIF text. |
__str__ |
Return the string representation of this object. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
Attributes:
| Name | Type | Description |
|---|---|---|
fitting_mode |
FittingMode
|
Active fitting-mode selector category. |
minimizer |
MinimizerCategoryBase
|
Active minimizer settings and result category. |
joint_fit |
object
|
Per-experiment weight collection for joint fitting. |
sequential_fit |
SequentialFit
|
Persisted settings for sequential fitting. |
sequential_fit_extract |
SequentialFitExtractCollection
|
Persisted extract rules for sequential fitting. |
as_cif |
str
|
Serialize the analysis section to a CIF string. |
unique_name |
str
|
Fallback unique name: the class name. |
parameters |
list
|
All parameters from all owned categories. |
categories |
list
|
All category objects owned by this object, sorted by priority. |
fit_parameters |
FitParameters
|
Persisted fit-parameter control snapshots. |
fit_result |
FitResultBase
|
Persisted common fit-result status metadata. |
fit_parameter_correlations |
FitParameterCorrelations
|
Persisted fit-parameter correlation summaries. |
software |
Software
|
Software snapshot for the latest successful fit. |
project |
object
|
Project that owns this analysis section. |
aliases |
object
|
Alias mappings used by symbolic constraints and displays. |
constraints |
object
|
Symbolic constraints owned by this analysis section. |
display |
AnalysisDisplay
|
Display helper for parameter tables, CIF, and fit results. |
fitter |
Fitter
|
Fitting engine used by this analysis object. |
fit_results |
object | None
|
Results from the most recent fit, if any. |
Attributes
fitting_mode
property
Active fitting-mode selector category.
minimizer
property
Active minimizer settings and result category.
joint_fit
property
Per-experiment weight collection for joint fitting.
sequential_fit
property
Persisted settings for sequential fitting.
sequential_fit_extract
property
Persisted extract rules for sequential fitting.
as_cif
property
Serialize the analysis section to a CIF string.
Returns:
| Type | Description |
|---|---|
str
|
The analysis section represented as a CIF document string. |
unique_name
property
Fallback unique name: the class name.
parameters
property
All parameters from all owned categories.
categories
property
All category objects owned by this object, sorted by priority.
fit_parameters
property
Persisted fit-parameter control snapshots.
fit_result
property
Persisted common fit-result status metadata.
fit_parameter_correlations
property
Persisted fit-parameter correlation summaries.
software
property
Software snapshot for the latest successful fit.
project
property
Project that owns this analysis section.
aliases
property
Alias mappings used by symbolic constraints and displays.
constraints
property
Symbolic constraints owned by this analysis section.
display
property
Display helper for parameter tables, CIF, and fit results.
fitter
property
writable
Fitting engine used by this analysis object.
fit_results
property
writable
Results from the most recent fit, if any.
Functions
help()
Print a summary of analysis properties and methods.
fit(*, resume=False, extra_steps=None)
Execute fitting for the currently selected fitting mode.
undo_fit()
Roll back the latest fit output and scalar state.
Returns:
| Type | Description |
|---|---|
UndoFitOutcome
|
Summary of the rollback operation. |
show_as_cif()
Pretty-print the analysis section as CIF text.
__str__()
Return the string representation of this object.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
Functions
calculators
Modules:
| Name | Description |
|---|---|
base |
|
crysfml |
|
cryspy |
|
factory |
Calculator factory — delegates to |
pdffit |
PDF calculation backend using diffpy.pdffit2 if available. |
Classes
Modules
base
Classes:
| Name | Description |
|---|---|
PowderReflnRecord |
Calculated powder reflection metadata for one reflection row. |
CalculatorBase |
Base API for diffraction calculation engines. |
Classes
PowderReflnRecord(phase_id, d_spacing, sin_theta_over_lambda, index_h, index_k, index_l, f_calc, f_squared_calc, two_theta=None, time_of_flight=None)
dataclass
Calculated powder reflection metadata for one reflection row.
CalculatorBase
Base API for diffraction calculation engines.
Methods:
| Name | Description |
|---|---|
calculate_structure_factors |
Calculate structure factors for one experiment. |
calculate_pattern |
Calculate diffraction pattern for one structure-experiment pair. |
last_powder_refln_records |
Return the last powder reflection records for one phase. |
Attributes:
| Name | Type | Description |
|---|---|---|
name |
str
|
Short identifier of the calculation engine. |
engine_imported |
bool
|
True if the underlying calculation library is available. |
name
abstractmethod
property
Short identifier of the calculation engine.
engine_imported
abstractmethod
property
True if the underlying calculation library is available.
calculate_structure_factors(structure, experiment, *, called_by_minimizer)
abstractmethod
Calculate structure factors for one experiment.
calculate_pattern(structure, experiment, *, called_by_minimizer)
abstractmethod
Calculate diffraction pattern for one structure-experiment pair.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
structure
|
Structures
|
The structure object. |
required |
experiment
|
ExperimentBase
|
The experiment object. |
required |
called_by_minimizer
|
bool
|
Whether the calculation is called by a minimizer. Default is False. |
required |
Returns:
| Type | Description |
|---|---|
np.ndarray
|
The calculated diffraction pattern as a NumPy array. |
last_powder_refln_records(structure, experiment, *, phase_id)
Return the last powder reflection records for one phase.
Backends that do not expose powder reflection metadata return
None so callers can clear stale reflection rows and warn.
crysfml
Classes:
| Name | Description |
|---|---|
CrysfmlCalculator |
Wrapper for Crysfml library. |
Classes
CrysfmlCalculator
Wrapper for Crysfml library.
Methods:
| Name | Description |
|---|---|
calculate_structure_factors |
Call Crysfml to calculate structure factors. |
calculate_pattern |
Calculate the diffraction pattern using Crysfml. |
last_powder_refln_records |
Return the last powder reflection records for one phase. |
Attributes:
| Name | Type | Description |
|---|---|---|
name |
str
|
Short identifier of this calculator engine. |
name
property
Short identifier of this calculator engine.
calculate_structure_factors(structures, experiments)
Call Crysfml to calculate structure factors.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
structures
|
Structures
|
The structures to calculate structure factors for. |
required |
experiments
|
Experiments
|
The experiments associated with the sample models. |
required |
Raises:
| Type | Description |
|---|---|
NotImplementedError
|
HKL calculation is not implemented for CrysfmlCalculator. |
calculate_pattern(structure, experiment, *, called_by_minimizer=False)
Calculate the diffraction pattern using Crysfml.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
structure
|
Structures
|
The structure to calculate the pattern for. |
required |
experiment
|
ExperimentBase
|
The experiment associated with the structure. |
required |
called_by_minimizer
|
bool
|
Whether the calculation is called by a minimizer. |
False
|
Returns:
| Type | Description |
|---|---|
np.ndarray | list[float]
|
The calculated diffraction pattern as a NumPy array or a list of floats. |
last_powder_refln_records(structure, experiment, *, phase_id)
Return the last powder reflection records for one phase.
Backends that do not expose powder reflection metadata return
None so callers can clear stale reflection rows and warn.
cryspy
Classes:
| Name | Description |
|---|---|
CryspyCalculator |
Cryspy-based diffraction calculator. |
Classes
CryspyCalculator()
Cryspy-based diffraction calculator.
Converts EasyDiffraction models into Cryspy objects and computes patterns.
Methods:
| Name | Description |
|---|---|
calculate_structure_factors |
Raise NotImplementedError as HKL calculation is not implemented. |
calculate_pattern |
Calculate the diffraction pattern using Cryspy. |
last_powder_refln_records |
Return powder reflection records from the latest pattern run. |
Attributes:
| Name | Type | Description |
|---|---|---|
name |
str
|
Short identifier of this calculator engine. |
name
property
Short identifier of this calculator engine.
calculate_structure_factors(structure, experiment, *, called_by_minimizer=False)
Raise NotImplementedError as HKL calculation is not implemented.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
structure
|
Structure
|
The structure to calculate structure factors for. |
required |
experiment
|
ExperimentBase
|
The experiment associated with the sample models. |
required |
called_by_minimizer
|
bool
|
Whether the calculation is called by a minimizer. |
False
|
calculate_pattern(structure, experiment, *, called_by_minimizer=False)
Calculate the diffraction pattern using Cryspy.
We only recreate the cryspy_obj if this method is - NOT called by the minimizer, or - the cryspy_dict is NOT yet created. In other cases, we are modifying the existing cryspy_dict This allows significantly speeding up the calculation
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
structure
|
Structure
|
The structure to calculate the pattern for. |
required |
experiment
|
ExperimentBase
|
The experiment associated with the structure. |
required |
called_by_minimizer
|
bool
|
Whether the calculation is called by a minimizer. |
False
|
Returns:
| Type | Description |
|---|---|
np.ndarray | list[float]
|
The calculated diffraction pattern as a NumPy array or a list of floats. |
last_powder_refln_records(structure, experiment, *, phase_id)
Return powder reflection records from the latest pattern run.
Functions
factory
Calculator factory — delegates to FactoryBase.
Overrides _supported_map to filter out calculators whose engines are
not importable in the current environment.
Classes:
| Name | Description |
|---|---|
CalculatorFactory |
Factory for creating calculation engine instances. |
Classes
CalculatorFactory
Factory for creating calculation engine instances.
Only calculators whose engine_imported flag is True are
available for creation.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
pdffit
PDF calculation backend using diffpy.pdffit2 if available.
The class adapts the engine to EasyDiffraction calculator interface and silences stdio on import to avoid noisy output in notebooks and logs.
Classes:
| Name | Description |
|---|---|
PdffitCalculator |
Wrapper for Pdffit library. |
Classes
PdffitCalculator
Wrapper for Pdffit library.
Methods:
| Name | Description |
|---|---|
calculate_structure_factors |
Return an empty list; PDF does not compute structure factors. |
calculate_pattern |
Calculate the PDF pattern using PDFfit2. |
last_powder_refln_records |
Return the last powder reflection records for one phase. |
Attributes:
| Name | Type | Description |
|---|---|---|
name |
str
|
Short identifier of this calculator engine. |
name
property
Short identifier of this calculator engine.
calculate_structure_factors(structures, experiments)
Return an empty list; PDF does not compute structure factors.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
structures
|
object
|
Unused; kept for interface consistency. |
required |
experiments
|
object
|
Unused; kept for interface consistency. |
required |
Returns:
| Type | Description |
|---|---|
list
|
An empty list. |
calculate_pattern(structure, experiment, *, called_by_minimizer=False)
Calculate the PDF pattern using PDFfit2.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
structure
|
Structure
|
The structure object supplying atom sites and cell parameters. |
required |
experiment
|
ExperimentBase
|
The experiment object supplying instrument and peak parameters. |
required |
called_by_minimizer
|
bool
|
Unused; kept for interface consistency. |
False
|
last_powder_refln_records(structure, experiment, *, phase_id)
Return the last powder reflection records for one phase.
Backends that do not expose powder reflection metadata return
None so callers can clear stale reflection rows and warn.
categories
Modules:
| Name | Description |
|---|---|
aliases |
|
constraints |
|
fit_parameter_correlations |
|
fit_parameters |
|
fit_result |
|
fitting_mode |
Analysis fitting-mode category exports. |
joint_fit |
|
minimizer |
Minimizer category implementations. |
sequential_fit |
|
sequential_fit_extract |
|
software |
Analysis software-provenance category exports. |
Classes
Modules
aliases
Modules:
| Name | Description |
|---|---|
default |
Alias category for mapping friendly names to parameters. |
factory |
Aliases factory — delegates entirely to |
Classes
Modules
default
Alias category for mapping friendly names to parameters.
Defines a small record type used by analysis configuration to refer to
parameters via readable labels instead of opaque identifiers. At runtime
each alias holds a direct object reference to the parameter; for CIF
serialization the parameter's unique_name is stored.
Classes:
| Name | Description |
|---|---|
Alias |
Single alias entry. |
Aliases |
Collection of :class: |
Alias()
Single alias entry.
Maps a human-readable label to a parameter object. The
param_unique_name descriptor stores the parameter's
unique_name for CIF serialization.
Methods:
| Name | Description |
|---|---|
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
label |
StringDescriptor
|
Human-readable alias label (e.g. |
param |
object | None
|
The referenced parameter object, or None before resolution. |
param_unique_name |
StringDescriptor
|
Unique name of the referenced parameter (for CIF). |
parameters |
list
|
Descriptors owned by this alias (excludes the param reference). |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
as_cif |
str
|
Return CIF representation of this object. |
label
property
writable
Human-readable alias label (e.g. 'biso_La').
Reading this property returns the underlying
StringDescriptor object. Assigning to it updates the
parameter value.
param
property
The referenced parameter object, or None before resolution.
param_unique_name
property
Unique name of the referenced parameter (for CIF).
Reading this property returns the underlying
StringDescriptor object.
parameters
property
Descriptors owned by this alias (excludes the param reference).
unique_name
property
Fully qualified name: datablock, category, entry.
as_cif
property
Return CIF representation of this object.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
Aliases()
Collection of :class:Alias items.
Methods:
| Name | Description |
|---|---|
create |
Create a new alias mapping a label to a parameter. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print a summary of public attributes and contained items. |
__getitem__ |
Return an item by name or positional index. |
__setitem__ |
Insert or replace an item under the given identity key. |
__delitem__ |
Delete an item by key or raise |
__contains__ |
Check whether an item with the given key exists. |
__iter__ |
Iterate over items in insertion order. |
__len__ |
Return the number of items in the collection. |
remove |
Remove an item by its key. |
keys |
Yield keys for all items in insertion order. |
values |
Yield items in insertion order. |
items |
Yield |
from_cif |
Populate this collection from a CIF block. |
add |
Insert or replace a pre-built item into the collection. |
Attributes:
| Name | Type | Description |
|---|---|---|
unique_name |
str | None
|
Return None; collections have no unique name. |
parameters |
list
|
All parameters from all items in this collection. |
as_cif |
str
|
Return CIF representation of this object. |
names |
list[str | None]
|
List of all item keys in the collection. |
scalar_descriptors |
list
|
Collection-level descriptors serialized outside the loop. |
unique_name
property
Return None; collections have no unique name.
parameters
property
All parameters from all items in this collection.
as_cif
property
Return CIF representation of this object.
names
property
List of all item keys in the collection.
scalar_descriptors
property
Collection-level descriptors serialized outside the loop.
create(*, label, param)
Create a new alias mapping a label to a parameter.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
label
|
str
|
Human-readable alias name (e.g. |
required |
param
|
object
|
The parameter object to reference. |
required |
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print a summary of public attributes and contained items.
__getitem__(key)
Return an item by name or positional index.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
key
|
str | int
|
Identity key (str) or zero-based positional index (int). |
required |
Returns:
| Type | Description |
|---|---|
GuardedBase
|
The item matching the given key or index. |
Raises:
| Type | Description |
|---|---|
TypeError
|
If key is neither |
__setitem__(name, item)
Insert or replace an item under the given identity key.
__delitem__(name)
Delete an item by key or raise KeyError if missing.
__contains__(name)
Check whether an item with the given key exists.
__iter__()
Iterate over items in insertion order.
__len__()
Return the number of items in the collection.
remove(name)
Remove an item by its key.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
name
|
str
|
Identity key of the item to remove. |
required |
keys()
Yield keys for all items in insertion order.
values()
Yield items in insertion order.
items()
Yield (key, item) pairs in insertion order.
from_cif(block)
Populate this collection from a CIF block.
add(item)
Insert or replace a pre-built item into the collection.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
item
|
object
|
A |
required |
factory
Aliases factory — delegates entirely to FactoryBase.
Classes:
| Name | Description |
|---|---|
AliasesFactory |
Create alias collections by tag. |
AliasesFactory
Create alias collections by tag.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
constraints
Modules:
| Name | Description |
|---|---|
default |
Simple symbolic constraint between parameters. |
factory |
Constraints factory — delegates entirely to |
Classes
Modules
default
Simple symbolic constraint between parameters.
Represents an equation of the form lhs_alias = rhs_expr stored as a
single expression string. The left- and right-hand sides are derived by
splitting the expression at the = sign.
Classes:
| Name | Description |
|---|---|
Constraint |
Single constraint item stored as |
Constraints |
Collection of :class: |
Constraint()
Single constraint item stored as lhs = rhs expression.
Methods:
| Name | Description |
|---|---|
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
id |
StringDescriptor
|
Explicit identifier for this constraint row. |
expression |
StringDescriptor
|
Full constraint equation (e.g. |
lhs_alias |
str
|
Left-hand side alias derived from the expression. |
rhs_expr |
str
|
Right-hand side expression derived from the expression. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
id
property
writable
Explicit identifier for this constraint row.
expression
property
writable
Full constraint equation (e.g. 'occ_Ba = 1 - occ_La').
Reading this property returns the underlying
StringDescriptor object. Assigning to it updates the value.
lhs_alias
property
Left-hand side alias derived from the expression.
rhs_expr
property
Right-hand side expression derived from the expression.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
Constraints()
Collection of :class:Constraint items.
Methods:
| Name | Description |
|---|---|
enable |
Activate constraints so they are applied during fitting. |
disable |
Deactivate constraints without deleting them. |
create |
Create a constraint from an expression string. |
show |
Print a table of all user-defined symbolic constraints. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print a summary of public attributes and contained items. |
__getitem__ |
Return an item by name or positional index. |
__setitem__ |
Insert or replace an item under the given identity key. |
__delitem__ |
Delete an item by key or raise |
__contains__ |
Check whether an item with the given key exists. |
__iter__ |
Iterate over items in insertion order. |
__len__ |
Return the number of items in the collection. |
remove |
Remove an item by its key. |
keys |
Yield keys for all items in insertion order. |
values |
Yield items in insertion order. |
items |
Yield |
from_cif |
Populate this collection from a CIF block. |
add |
Insert or replace a pre-built item into the collection. |
Attributes:
| Name | Type | Description |
|---|---|---|
enabled |
bool
|
Whether constraints are currently active. |
unique_name |
str | None
|
Return None; collections have no unique name. |
parameters |
list
|
All parameters from all items in this collection. |
as_cif |
str
|
Return CIF representation of this object. |
names |
list[str | None]
|
List of all item keys in the collection. |
scalar_descriptors |
list
|
Collection-level descriptors serialized outside the loop. |
enabled
property
Whether constraints are currently active.
unique_name
property
Return None; collections have no unique name.
parameters
property
All parameters from all items in this collection.
as_cif
property
Return CIF representation of this object.
names
property
List of all item keys in the collection.
scalar_descriptors
property
Collection-level descriptors serialized outside the loop.
enable()
Activate constraints so they are applied during fitting.
disable()
Deactivate constraints without deleting them.
create(*, expression, id=None)
Create a constraint from an expression string.
Automatically enables constraints on the first call.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
expression
|
str
|
Constraint equation, e.g. |
required |
id
|
str | None
|
Explicit row identifier. When not |
None
|
show()
Print a table of all user-defined symbolic constraints.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print a summary of public attributes and contained items.
__getitem__(key)
Return an item by name or positional index.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
key
|
str | int
|
Identity key (str) or zero-based positional index (int). |
required |
Returns:
| Type | Description |
|---|---|
GuardedBase
|
The item matching the given key or index. |
Raises:
| Type | Description |
|---|---|
TypeError
|
If key is neither |
__setitem__(name, item)
Insert or replace an item under the given identity key.
__delitem__(name)
Delete an item by key or raise KeyError if missing.
__contains__(name)
Check whether an item with the given key exists.
__iter__()
Iterate over items in insertion order.
__len__()
Return the number of items in the collection.
remove(name)
Remove an item by its key.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
name
|
str
|
Identity key of the item to remove. |
required |
keys()
Yield keys for all items in insertion order.
values()
Yield items in insertion order.
items()
Yield (key, item) pairs in insertion order.
from_cif(block)
Populate this collection from a CIF block.
add(item)
Insert or replace a pre-built item into the collection.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
item
|
object
|
A |
required |
factory
Constraints factory — delegates entirely to FactoryBase.
Classes:
| Name | Description |
|---|---|
ConstraintsFactory |
Create constraint collections by tag. |
ConstraintsFactory
Create constraint collections by tag.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
fit_parameter_correlations
Modules:
| Name | Description |
|---|---|
default |
Persisted fit-parameter correlation summaries. |
factory |
Fit-parameter-correlation factory. |
Classes
Modules
default
Persisted fit-parameter correlation summaries.
Classes:
| Name | Description |
|---|---|
FitParameterCorrelationItem |
Single persisted fit-parameter correlation row. |
FitParameterCorrelations |
Collection of persisted fit-parameter correlation summaries. |
FitParameterCorrelationItem()
Single persisted fit-parameter correlation row.
Methods:
| Name | Description |
|---|---|
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
id |
StringDescriptor
|
Stable identifier for the persisted correlation row. |
source_kind |
EnumDescriptor
|
Origin of the persisted correlation summary. |
param_unique_name_i |
StringDescriptor
|
First unique parameter name in the persisted pair. |
param_unique_name_j |
StringDescriptor
|
Second unique parameter name in the persisted pair. |
correlation |
NumericDescriptor
|
Persisted correlation coefficient for the parameter pair. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
id
property
Stable identifier for the persisted correlation row.
source_kind
property
Origin of the persisted correlation summary.
param_unique_name_i
property
First unique parameter name in the persisted pair.
param_unique_name_j
property
Second unique parameter name in the persisted pair.
correlation
property
Persisted correlation coefficient for the parameter pair.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
FitParameterCorrelations()
Collection of persisted fit-parameter correlation summaries.
Methods:
| Name | Description |
|---|---|
create |
Create a persisted fit-parameter correlation row. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print a summary of public attributes and contained items. |
__getitem__ |
Return an item by name or positional index. |
__setitem__ |
Insert or replace an item under the given identity key. |
__delitem__ |
Delete an item by key or raise |
__contains__ |
Check whether an item with the given key exists. |
__iter__ |
Iterate over items in insertion order. |
__len__ |
Return the number of items in the collection. |
remove |
Remove an item by its key. |
keys |
Yield keys for all items in insertion order. |
values |
Yield items in insertion order. |
items |
Yield |
from_cif |
Populate this collection from a CIF block. |
add |
Insert or replace a pre-built item into the collection. |
Attributes:
| Name | Type | Description |
|---|---|---|
unique_name |
str | None
|
Return None; collections have no unique name. |
parameters |
list
|
All parameters from all items in this collection. |
as_cif |
str
|
Return CIF representation of this object. |
names |
list[str | None]
|
List of all item keys in the collection. |
scalar_descriptors |
list
|
Collection-level descriptors serialized outside the loop. |
unique_name
property
Return None; collections have no unique name.
parameters
property
All parameters from all items in this collection.
as_cif
property
Return CIF representation of this object.
names
property
List of all item keys in the collection.
scalar_descriptors
property
Collection-level descriptors serialized outside the loop.
create(*, source_kind, param_unique_name_i, param_unique_name_j, correlation, id=None)
Create a persisted fit-parameter correlation row.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
source_kind
|
str
|
Origin of the persisted correlation summary. |
required |
param_unique_name_i
|
str
|
First unique parameter name in the pair. |
required |
param_unique_name_j
|
str
|
Second unique parameter name in the pair. |
required |
correlation
|
float
|
Correlation coefficient for the parameter pair. |
required |
id
|
str | None
|
Explicit persisted row identifier. When omitted, a simple sequential identifier is generated. |
None
|
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print a summary of public attributes and contained items.
__getitem__(key)
Return an item by name or positional index.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
key
|
str | int
|
Identity key (str) or zero-based positional index (int). |
required |
Returns:
| Type | Description |
|---|---|
GuardedBase
|
The item matching the given key or index. |
Raises:
| Type | Description |
|---|---|
TypeError
|
If key is neither |
__setitem__(name, item)
Insert or replace an item under the given identity key.
__delitem__(name)
Delete an item by key or raise KeyError if missing.
__contains__(name)
Check whether an item with the given key exists.
__iter__()
Iterate over items in insertion order.
__len__()
Return the number of items in the collection.
remove(name)
Remove an item by its key.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
name
|
str
|
Identity key of the item to remove. |
required |
keys()
Yield keys for all items in insertion order.
values()
Yield items in insertion order.
items()
Yield (key, item) pairs in insertion order.
from_cif(block)
Populate this collection from a CIF block.
add(item)
Insert or replace a pre-built item into the collection.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
item
|
object
|
A |
required |
factory
Fit-parameter-correlation factory.
Classes:
| Name | Description |
|---|---|
FitParameterCorrelationsFactory |
Create fit-parameter correlation collections by tag. |
FitParameterCorrelationsFactory
Create fit-parameter correlation collections by tag.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
fit_parameters
Modules:
| Name | Description |
|---|---|
default |
Fit-parameter control snapshots. |
factory |
Fit-parameter factory. |
Classes
Modules
default
Fit-parameter control snapshots.
Classes:
| Name | Description |
|---|---|
FitParameterItem |
Single persisted fit-parameter control row. |
FitParameters |
Collection of persisted fit-parameter control snapshots. |
FitParameterItem()
Single persisted fit-parameter control row.
Methods:
| Name | Description |
|---|---|
has_posterior_summary |
Return whether any posterior summary field is populated. |
posterior_summary |
Return this row as a posterior summary, if populated. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
param_unique_name |
StringDescriptor
|
Unique name of the referenced live parameter. |
fit_min |
NumericDescriptor
|
Persisted lower fit bound. |
fit_max |
NumericDescriptor
|
Persisted upper fit bound. |
fit_bounds_uncertainty_multiplier |
NumericDescriptor
|
Multiplier used to derive fit bounds from uncertainty. |
start_value |
NumericDescriptor
|
Persisted pre-fit value snapshot. |
start_uncertainty |
NumericDescriptor
|
Persisted pre-fit uncertainty snapshot. |
posterior_best_sample_value |
NumericDescriptor
|
Highest-posterior sampled parameter value. |
posterior_median |
NumericDescriptor
|
Posterior median value. |
posterior_uncertainty |
NumericDescriptor
|
Posterior standard deviation. |
posterior_interval_68_low |
NumericDescriptor
|
Lower bound of the 68% credible interval. |
posterior_interval_68_high |
NumericDescriptor
|
Upper bound of the 68% credible interval. |
posterior_interval_95_low |
NumericDescriptor
|
Lower bound of the 95% credible interval. |
posterior_interval_95_high |
NumericDescriptor
|
Upper bound of the 95% credible interval. |
posterior_gelman_rubin |
NumericDescriptor
|
Rank-normalized split-R-hat when available. |
posterior_effective_sample_size_bulk |
NumericDescriptor
|
Bulk effective sample size when available. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
param_unique_name
property
Unique name of the referenced live parameter.
fit_min
property
Persisted lower fit bound.
fit_max
property
Persisted upper fit bound.
fit_bounds_uncertainty_multiplier
property
Multiplier used to derive fit bounds from uncertainty.
start_value
property
Persisted pre-fit value snapshot.
start_uncertainty
property
Persisted pre-fit uncertainty snapshot.
posterior_best_sample_value
property
Highest-posterior sampled parameter value.
posterior_median
property
Posterior median value.
posterior_uncertainty
property
Posterior standard deviation.
posterior_interval_68_low
property
Lower bound of the 68% credible interval.
posterior_interval_68_high
property
Upper bound of the 68% credible interval.
posterior_interval_95_low
property
Lower bound of the 95% credible interval.
posterior_interval_95_high
property
Upper bound of the 95% credible interval.
posterior_gelman_rubin
property
Rank-normalized split-R-hat when available.
posterior_effective_sample_size_bulk
property
Bulk effective sample size when available.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
has_posterior_summary()
Return whether any posterior summary field is populated.
posterior_summary(*, display_name)
Return this row as a posterior summary, if populated.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
FitParameters()
Collection of persisted fit-parameter control snapshots.
Methods:
| Name | Description |
|---|---|
create |
Create a persisted fit-parameter control snapshot row. |
set_posterior_summary |
Attach a posterior summary to an existing row. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print a summary of public attributes and contained items. |
__getitem__ |
Return an item by name or positional index. |
__setitem__ |
Insert or replace an item under the given identity key. |
__delitem__ |
Delete an item by key or raise |
__contains__ |
Check whether an item with the given key exists. |
__iter__ |
Iterate over items in insertion order. |
__len__ |
Return the number of items in the collection. |
remove |
Remove an item by its key. |
keys |
Yield keys for all items in insertion order. |
values |
Yield items in insertion order. |
items |
Yield |
from_cif |
Populate this collection from a CIF block. |
add |
Insert or replace a pre-built item into the collection. |
Attributes:
| Name | Type | Description |
|---|---|---|
unique_name |
str | None
|
Return None; collections have no unique name. |
parameters |
list
|
All parameters from all items in this collection. |
as_cif |
str
|
Return CIF representation of this object. |
names |
list[str | None]
|
List of all item keys in the collection. |
scalar_descriptors |
list
|
Collection-level descriptors serialized outside the loop. |
unique_name
property
Return None; collections have no unique name.
parameters
property
All parameters from all items in this collection.
as_cif
property
Return CIF representation of this object.
names
property
List of all item keys in the collection.
scalar_descriptors
property
Collection-level descriptors serialized outside the loop.
create(*, param_unique_name, fit_min, fit_max, fit_bounds_uncertainty_multiplier=None, start_value=None, start_uncertainty=None)
Create a persisted fit-parameter control snapshot row.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
param_unique_name
|
str
|
Unique name of the referenced live parameter. |
required |
fit_min
|
float
|
Persisted lower fit bound. |
required |
fit_max
|
float
|
Persisted upper fit bound. |
required |
fit_bounds_uncertainty_multiplier
|
float | None
|
Multiplier used to derive fit bounds from uncertainty. |
None
|
start_value
|
float | None
|
Persisted pre-fit value snapshot. |
None
|
start_uncertainty
|
float | None
|
Persisted pre-fit uncertainty snapshot. |
None
|
set_posterior_summary(summary)
Attach a posterior summary to an existing row.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print a summary of public attributes and contained items.
__getitem__(key)
Return an item by name or positional index.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
key
|
str | int
|
Identity key (str) or zero-based positional index (int). |
required |
Returns:
| Type | Description |
|---|---|
GuardedBase
|
The item matching the given key or index. |
Raises:
| Type | Description |
|---|---|
TypeError
|
If key is neither |
__setitem__(name, item)
Insert or replace an item under the given identity key.
__delitem__(name)
Delete an item by key or raise KeyError if missing.
__contains__(name)
Check whether an item with the given key exists.
__iter__()
Iterate over items in insertion order.
__len__()
Return the number of items in the collection.
remove(name)
Remove an item by its key.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
name
|
str
|
Identity key of the item to remove. |
required |
keys()
Yield keys for all items in insertion order.
values()
Yield items in insertion order.
items()
Yield (key, item) pairs in insertion order.
from_cif(block)
Populate this collection from a CIF block.
add(item)
Insert or replace a pre-built item into the collection.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
item
|
object
|
A |
required |
factory
Fit-parameter factory.
Classes:
| Name | Description |
|---|---|
FitParametersFactory |
Create fit-parameter collections by tag. |
FitParametersFactory
Create fit-parameter collections by tag.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
fit_result
Modules:
| Name | Description |
|---|---|
base |
Common fit-result status category. |
bayesian |
Bayesian fit-result category. |
default |
Default fit-result category import. |
factory |
Fit-result factory. |
lsq |
Least-squares fit-result category. |
Classes
Modules
base
Common fit-result status category.
Classes:
| Name | Description |
|---|---|
FitResultBase |
Common persisted fit-result status metadata. |
FitResultBase()
Common persisted fit-result status metadata.
Methods:
| Name | Description |
|---|---|
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
result_kind |
EnumDescriptor
|
Kind of the latest persisted fit-result projection. |
success |
BoolDescriptor
|
Whether the latest persisted fit-result projection succeeded. |
message |
StringDescriptor
|
Status message for the latest persisted fit-result projection. |
iterations |
IntegerDescriptor
|
Iteration count for the latest persisted fit-result projection. |
fitting_time |
NumericDescriptor
|
Fitting time in seconds for the latest persisted projection. |
reduced_chi_square |
NumericDescriptor
|
Reduced chi-square for the latest persisted projection. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
result_kind
property
Kind of the latest persisted fit-result projection.
success
property
Whether the latest persisted fit-result projection succeeded.
message
property
Status message for the latest persisted fit-result projection.
iterations
property
Iteration count for the latest persisted fit-result projection.
fitting_time
property
Fitting time in seconds for the latest persisted projection.
reduced_chi_square
property
Reduced chi-square for the latest persisted projection.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
bayesian
Bayesian fit-result category.
Classes:
| Name | Description |
|---|---|
BayesianFitResult |
Persisted Bayesian fit-result metadata. |
BayesianFitResult()
Persisted Bayesian fit-result metadata.
Methods:
| Name | Description |
|---|---|
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
point_estimate_name |
StringDescriptor
|
Committed sampled point estimate name. |
sampler_completed |
BoolDescriptor
|
Whether the sampler completed and returned posterior data. |
credible_interval_inner |
NumericDescriptor
|
Inner credible-interval level used in summaries. |
credible_interval_outer |
NumericDescriptor
|
Outer credible-interval level used in summaries. |
resolved_random_seed |
IntegerDescriptor
|
Runtime random seed used by the sampler. |
acceptance_rate_mean |
NumericDescriptor
|
Mean sampler acceptance rate. |
gelman_rubin_max |
NumericDescriptor
|
Maximum rank-normalized split R-hat. |
effective_sample_size_min |
NumericDescriptor
|
Minimum bulk effective sample size. |
best_log_posterior |
NumericDescriptor
|
Best log-posterior value found. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
result_kind |
EnumDescriptor
|
Kind of the latest persisted fit-result projection. |
success |
BoolDescriptor
|
Whether the latest persisted fit-result projection succeeded. |
message |
StringDescriptor
|
Status message for the latest persisted fit-result projection. |
iterations |
IntegerDescriptor
|
Iteration count for the latest persisted fit-result projection. |
fitting_time |
NumericDescriptor
|
Fitting time in seconds for the latest persisted projection. |
reduced_chi_square |
NumericDescriptor
|
Reduced chi-square for the latest persisted projection. |
point_estimate_name
property
Committed sampled point estimate name.
sampler_completed
property
Whether the sampler completed and returned posterior data.
credible_interval_inner
property
Inner credible-interval level used in summaries.
credible_interval_outer
property
Outer credible-interval level used in summaries.
resolved_random_seed
property
Runtime random seed used by the sampler.
acceptance_rate_mean
property
Mean sampler acceptance rate.
gelman_rubin_max
property
Maximum rank-normalized split R-hat.
effective_sample_size_min
property
Minimum bulk effective sample size.
best_log_posterior
property
Best log-posterior value found.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
result_kind
property
Kind of the latest persisted fit-result projection.
success
property
Whether the latest persisted fit-result projection succeeded.
message
property
Status message for the latest persisted fit-result projection.
iterations
property
Iteration count for the latest persisted fit-result projection.
fitting_time
property
Fitting time in seconds for the latest persisted projection.
reduced_chi_square
property
Reduced chi-square for the latest persisted projection.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
default
Default fit-result category import.
factory
Fit-result factory.
Classes:
| Name | Description |
|---|---|
FitResultFactory |
Create fit-result categories by tag. |
FitResultFactory
Create fit-result categories by tag.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
lsq
Least-squares fit-result category.
Classes:
| Name | Description |
|---|---|
LeastSquaresFitResult |
Persisted least-squares fit-result metadata. |
LeastSquaresFitResult()
Persisted least-squares fit-result metadata.
Methods:
| Name | Description |
|---|---|
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
result_kind |
EnumDescriptor
|
Kind of the latest persisted fit-result projection. |
success |
BoolDescriptor
|
Whether the latest persisted fit-result projection succeeded. |
message |
StringDescriptor
|
Status message for the latest persisted fit-result projection. |
iterations |
IntegerDescriptor
|
Iteration count for the latest persisted fit-result projection. |
fitting_time |
NumericDescriptor
|
Fitting time in seconds for the latest persisted projection. |
reduced_chi_square |
NumericDescriptor
|
Reduced chi-square for the latest persisted projection. |
prof_r_factor |
NumericDescriptor
|
Profile R factor for powder fits. |
prof_wr_factor |
NumericDescriptor
|
Weighted profile R factor for powder fits. |
prof_wr_expected |
NumericDescriptor
|
Expected weighted profile R factor for powder fits. |
number_restraints |
NumericDescriptor
|
Number of restraints used in the deterministic fit. |
number_constraints |
NumericDescriptor
|
Number of constraints used in the deterministic fit. |
shift_over_su_max |
NumericDescriptor
|
Maximum absolute parameter shift divided by s.u. |
shift_over_su_mean |
NumericDescriptor
|
Mean absolute parameter shift divided by s.u. |
profile_function |
StringDescriptor
|
Active profile function names. |
background_function |
StringDescriptor
|
Active background function names. |
r_factor_all |
NumericDescriptor
|
R factor for all observed data. |
wr_factor_all |
NumericDescriptor
|
Weighted R factor for all observed data. |
r_factor_gt |
NumericDescriptor
|
R factor for observations above the threshold. |
wr_factor_gt |
NumericDescriptor
|
Weighted R factor for observations above the threshold. |
threshold_expression |
StringDescriptor
|
Expression defining the observed-reflection threshold. |
number_reflns_total |
NumericDescriptor
|
Total number of reflections represented in the fit. |
number_reflns_gt |
NumericDescriptor
|
Number of reflections above the observed threshold. |
objective_name |
StringDescriptor
|
Objective function name for the persisted deterministic fit. |
objective_value |
NumericDescriptor
|
Objective value for the persisted deterministic fit. |
n_data_points |
NumericDescriptor
|
Number of data points used in the persisted deterministic fit. |
n_parameters |
NumericDescriptor
|
Number of parameters in the persisted deterministic fit. |
n_free_parameters |
NumericDescriptor
|
Number of free parameters in the persisted deterministic fit. |
degrees_of_freedom |
NumericDescriptor
|
Degrees of freedom for the persisted deterministic fit. |
covariance_available |
BoolDescriptor
|
Whether deterministic covariance was available. |
correlation_available |
BoolDescriptor
|
Whether deterministic correlations were available. |
exit_reason |
StringDescriptor
|
Backend exit reason for the persisted deterministic fit. |
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
result_kind
property
Kind of the latest persisted fit-result projection.
success
property
Whether the latest persisted fit-result projection succeeded.
message
property
Status message for the latest persisted fit-result projection.
iterations
property
Iteration count for the latest persisted fit-result projection.
fitting_time
property
Fitting time in seconds for the latest persisted projection.
reduced_chi_square
property
Reduced chi-square for the latest persisted projection.
prof_r_factor
property
Profile R factor for powder fits.
prof_wr_factor
property
Weighted profile R factor for powder fits.
prof_wr_expected
property
Expected weighted profile R factor for powder fits.
number_restraints
property
Number of restraints used in the deterministic fit.
number_constraints
property
Number of constraints used in the deterministic fit.
shift_over_su_max
property
Maximum absolute parameter shift divided by s.u.
shift_over_su_mean
property
Mean absolute parameter shift divided by s.u.
profile_function
property
Active profile function names.
background_function
property
Active background function names.
r_factor_all
property
R factor for all observed data.
wr_factor_all
property
Weighted R factor for all observed data.
r_factor_gt
property
R factor for observations above the threshold.
wr_factor_gt
property
Weighted R factor for observations above the threshold.
threshold_expression
property
Expression defining the observed-reflection threshold.
number_reflns_total
property
Total number of reflections represented in the fit.
number_reflns_gt
property
Number of reflections above the observed threshold.
objective_name
property
Objective function name for the persisted deterministic fit.
objective_value
property
Objective value for the persisted deterministic fit.
n_data_points
property
Number of data points used in the persisted deterministic fit.
n_parameters
property
Number of parameters in the persisted deterministic fit.
n_free_parameters
property
Number of free parameters in the persisted deterministic fit.
degrees_of_freedom
property
Degrees of freedom for the persisted deterministic fit.
covariance_available
property
Whether deterministic covariance was available.
correlation_available
property
Whether deterministic correlations were available.
exit_reason
property
Backend exit reason for the persisted deterministic fit.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
fitting_mode
Analysis fitting-mode category exports.
Modules:
| Name | Description |
|---|---|
default |
Analysis fitting-mode category. |
factory |
Factory for analysis fitting-mode categories. |
Classes
Modules
default
Analysis fitting-mode category.
Classes:
| Name | Description |
|---|---|
FittingMode |
Fitting-mode selector for an analysis. |
FittingMode()
Fitting-mode selector for an analysis.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
factory
Factory for analysis fitting-mode categories.
Classes:
| Name | Description |
|---|---|
FittingModeFactory |
Create analysis fitting-mode category instances. |
FittingModeFactory
Create analysis fitting-mode category instances.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
joint_fit
Modules:
| Name | Description |
|---|---|
default |
Joint-fit weighting configuration. |
factory |
Joint-fit factory - delegates to |
Classes
Modules
default
Joint-fit weighting configuration.
Stores per-experiment weights to be used when multiple experiments are fitted simultaneously.
Classes:
| Name | Description |
|---|---|
JointFitItem |
A single joint-fit entry. |
JointFitCollection |
Collection of :class: |
JointFitItem()
A single joint-fit entry.
Methods:
| Name | Description |
|---|---|
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
experiment_id |
StringDescriptor
|
Experiment identifier. |
weight |
NumericDescriptor
|
Weight factor. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
experiment_id
property
writable
Experiment identifier.
Reading this property returns the underlying
StringDescriptor object. Assigning to it updates the
parameter value.
weight
property
writable
Weight factor.
Reading this property returns the underlying
NumericDescriptor object. Assigning to it updates the
parameter value.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
JointFitCollection()
Collection of :class:JointFitItem items.
Methods:
| Name | Description |
|---|---|
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print a summary of public attributes and contained items. |
__getitem__ |
Return an item by name or positional index. |
__setitem__ |
Insert or replace an item under the given identity key. |
__delitem__ |
Delete an item by key or raise |
__contains__ |
Check whether an item with the given key exists. |
__iter__ |
Iterate over items in insertion order. |
__len__ |
Return the number of items in the collection. |
remove |
Remove an item by its key. |
keys |
Yield keys for all items in insertion order. |
values |
Yield items in insertion order. |
items |
Yield |
from_cif |
Populate this collection from a CIF block. |
add |
Insert or replace a pre-built item into the collection. |
create |
Create a new item with the given attributes and add it. |
Attributes:
| Name | Type | Description |
|---|---|---|
unique_name |
str | None
|
Return None; collections have no unique name. |
parameters |
list
|
All parameters from all items in this collection. |
as_cif |
str
|
Return CIF representation of this object. |
names |
list[str | None]
|
List of all item keys in the collection. |
scalar_descriptors |
list
|
Collection-level descriptors serialized outside the loop. |
unique_name
property
Return None; collections have no unique name.
parameters
property
All parameters from all items in this collection.
as_cif
property
Return CIF representation of this object.
names
property
List of all item keys in the collection.
scalar_descriptors
property
Collection-level descriptors serialized outside the loop.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print a summary of public attributes and contained items.
__getitem__(key)
Return an item by name or positional index.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
key
|
str | int
|
Identity key (str) or zero-based positional index (int). |
required |
Returns:
| Type | Description |
|---|---|
GuardedBase
|
The item matching the given key or index. |
Raises:
| Type | Description |
|---|---|
TypeError
|
If key is neither |
__setitem__(name, item)
Insert or replace an item under the given identity key.
__delitem__(name)
Delete an item by key or raise KeyError if missing.
__contains__(name)
Check whether an item with the given key exists.
__iter__()
Iterate over items in insertion order.
__len__()
Return the number of items in the collection.
remove(name)
Remove an item by its key.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
name
|
str
|
Identity key of the item to remove. |
required |
keys()
Yield keys for all items in insertion order.
values()
Yield items in insertion order.
items()
Yield (key, item) pairs in insertion order.
from_cif(block)
Populate this collection from a CIF block.
add(item)
Insert or replace a pre-built item into the collection.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
item
|
object
|
A |
required |
create(**kwargs)
Create a new item with the given attributes and add it.
A default instance of the collection's item type is created,
then each keyword argument is applied via setattr.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**kwargs
|
object
|
Attribute names and values for the new item. |
{}
|
factory
Joint-fit factory - delegates to FactoryBase.
Classes:
| Name | Description |
|---|---|
JointFitFactory |
Create joint-fit collections by tag. |
JointFitFactory
Create joint-fit collections by tag.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
minimizer
Minimizer category implementations.
Modules:
| Name | Description |
|---|---|
base |
Base class for persisted minimizer category items. |
bayesian_base |
Behavior helpers for Bayesian minimizer categories. |
bumps |
Persisted category for the default BUMPS minimizer. |
bumps_amoeba |
Persisted category for the BUMPS amoeba minimizer. |
bumps_de |
Persisted category for the BUMPS de minimizer. |
bumps_dream |
Persisted category for the BUMPS DREAM minimizer. |
bumps_lm |
Persisted category for the BUMPS lm minimizer. |
dfols |
Persisted category for the DFO-LS minimizer. |
emcee |
Persisted category for the emcee minimizer. |
factory |
Factory for persisted minimizer category items. |
lmfit |
Persisted category for the default LMFIT minimizer. |
lmfit_least_squares |
Persisted category for the LMFIT least_squares minimizer. |
lmfit_leastsq |
Persisted category for the LMFIT leastsq minimizer. |
lsq_base |
Behavior helpers for deterministic minimizer categories. |
Classes
Modules
base
Base class for persisted minimizer category items.
Classes:
| Name | Description |
|---|---|
MinimizerCategoryBase |
Base class for persisted minimizer settings and results. |
MinimizerCategoryBase()
Base class for persisted minimizer settings and results.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
bayesian_base
Behavior helpers for Bayesian minimizer categories.
Classes:
| Name | Description |
|---|---|
BayesianMinimizerBase |
Shared behavior for Bayesian minimizer categories. |
BayesianMinimizerBase()
Shared behavior for Bayesian minimizer categories.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
sampling_steps |
IntegerDescriptor
|
Total sampler iterations per chain. |
burn_in_steps |
IntegerDescriptor
|
Sampler iterations discarded as warm-up. |
thinning_interval |
IntegerDescriptor
|
Sampler thinning interval. |
population_size |
IntegerDescriptor
|
Number of chains or walkers. |
parallel_workers |
IntegerDescriptor
|
Worker count; 0 uses all available CPUs. |
initialization_method |
StringDescriptor
|
Sampler initialization method. |
random_seed |
IntegerDescriptor
|
Random seed; None uses a system-derived seed. |
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
sampling_steps
property
writable
Total sampler iterations per chain.
burn_in_steps
property
writable
Sampler iterations discarded as warm-up.
thinning_interval
property
writable
Sampler thinning interval.
population_size
property
writable
Number of chains or walkers.
parallel_workers
property
writable
Worker count; 0 uses all available CPUs.
initialization_method
property
writable
Sampler initialization method.
random_seed
property
writable
Random seed; None uses a system-derived seed.
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
bumps
Persisted category for the default BUMPS minimizer.
Classes:
| Name | Description |
|---|---|
BumpsMinimizer |
Persisted settings for the default BUMPS minimizer. |
BumpsMinimizer()
Persisted settings for the default BUMPS minimizer.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
max_iterations |
IntegerDescriptor
|
Maximum solver iterations. |
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
max_iterations
property
writable
Maximum solver iterations.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
bumps_amoeba
Persisted category for the BUMPS amoeba minimizer.
Classes:
| Name | Description |
|---|---|
BumpsAmoebaMinimizer |
Persisted settings for the BUMPS amoeba minimizer. |
BumpsAmoebaMinimizer()
Persisted settings for the BUMPS amoeba minimizer.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
max_iterations |
IntegerDescriptor
|
Maximum solver iterations. |
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
max_iterations
property
writable
Maximum solver iterations.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
bumps_de
Persisted category for the BUMPS de minimizer.
Classes:
| Name | Description |
|---|---|
BumpsDeMinimizer |
Persisted settings for the BUMPS de minimizer. |
BumpsDeMinimizer()
Persisted settings for the BUMPS de minimizer.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
max_iterations |
IntegerDescriptor
|
Maximum solver iterations. |
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
max_iterations
property
writable
Maximum solver iterations.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
bumps_dream
Persisted category for the BUMPS DREAM minimizer.
Classes:
| Name | Description |
|---|---|
BumpsDreamMinimizer |
Persisted settings for the BUMPS DREAM minimizer. |
BumpsDreamMinimizer()
Persisted settings for the BUMPS DREAM minimizer.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
sampling_steps |
IntegerDescriptor
|
Total sampler iterations per chain. |
burn_in_steps |
IntegerDescriptor
|
Sampler iterations discarded as warm-up. |
thinning_interval |
IntegerDescriptor
|
Sampler thinning interval. |
population_size |
IntegerDescriptor
|
Number of chains or walkers. |
parallel_workers |
IntegerDescriptor
|
Worker count; 0 uses all available CPUs. |
initialization_method |
StringDescriptor
|
Sampler initialization method. |
random_seed |
IntegerDescriptor
|
Random seed; None uses a system-derived seed. |
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
sampling_steps
property
writable
Total sampler iterations per chain.
burn_in_steps
property
writable
Sampler iterations discarded as warm-up.
thinning_interval
property
writable
Sampler thinning interval.
population_size
property
writable
Number of chains or walkers.
parallel_workers
property
writable
Worker count; 0 uses all available CPUs.
initialization_method
property
writable
Sampler initialization method.
random_seed
property
writable
Random seed; None uses a system-derived seed.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
bumps_lm
Persisted category for the BUMPS lm minimizer.
Classes:
| Name | Description |
|---|---|
BumpsLmMinimizer |
Persisted settings for the BUMPS lm minimizer. |
BumpsLmMinimizer()
Persisted settings for the BUMPS lm minimizer.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
max_iterations |
IntegerDescriptor
|
Maximum solver iterations. |
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
max_iterations
property
writable
Maximum solver iterations.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
dfols
Persisted category for the DFO-LS minimizer.
Classes:
| Name | Description |
|---|---|
DfolsMinimizer |
Persisted settings for the DFO-LS minimizer. |
DfolsMinimizer()
Persisted settings for the DFO-LS minimizer.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
max_iterations |
IntegerDescriptor
|
Maximum solver iterations. |
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
max_iterations
property
writable
Maximum solver iterations.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
emcee
Persisted category for the emcee minimizer.
Classes:
| Name | Description |
|---|---|
EmceeMinimizer |
Persisted settings for the emcee minimizer. |
EmceeMinimizer()
Persisted settings for the emcee minimizer.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
proposal_moves |
StringDescriptor
|
Single emcee proposal move. |
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
sampling_steps |
IntegerDescriptor
|
Total sampler iterations per chain. |
burn_in_steps |
IntegerDescriptor
|
Sampler iterations discarded as warm-up. |
thinning_interval |
IntegerDescriptor
|
Sampler thinning interval. |
population_size |
IntegerDescriptor
|
Number of chains or walkers. |
parallel_workers |
IntegerDescriptor
|
Worker count; 0 uses all available CPUs. |
initialization_method |
StringDescriptor
|
Sampler initialization method. |
random_seed |
IntegerDescriptor
|
Random seed; None uses a system-derived seed. |
proposal_moves
property
writable
Single emcee proposal move.
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
sampling_steps
property
writable
Total sampler iterations per chain.
burn_in_steps
property
writable
Sampler iterations discarded as warm-up.
thinning_interval
property
writable
Sampler thinning interval.
population_size
property
writable
Number of chains or walkers.
parallel_workers
property
writable
Worker count; 0 uses all available CPUs.
initialization_method
property
writable
Sampler initialization method.
random_seed
property
writable
Random seed; None uses a system-derived seed.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
factory
Factory for persisted minimizer category items.
Classes:
| Name | Description |
|---|---|
MinimizerCategoryFactory |
Create minimizer category items by tag. |
MinimizerCategoryFactory
Create minimizer category items by tag.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
lmfit
Persisted category for the default LMFIT minimizer.
Classes:
| Name | Description |
|---|---|
LmfitMinimizer |
Persisted settings for the default LMFIT minimizer. |
LmfitMinimizer()
Persisted settings for the default LMFIT minimizer.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
max_iterations |
IntegerDescriptor
|
Maximum solver iterations. |
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
max_iterations
property
writable
Maximum solver iterations.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
lmfit_least_squares
Persisted category for the LMFIT least_squares minimizer.
Classes:
| Name | Description |
|---|---|
LmfitLeastSquaresMinimizer |
Persisted settings for the LMFIT least_squares minimizer. |
LmfitLeastSquaresMinimizer()
Persisted settings for the LMFIT least_squares minimizer.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
max_iterations |
IntegerDescriptor
|
Maximum solver iterations. |
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
max_iterations
property
writable
Maximum solver iterations.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
lmfit_leastsq
Persisted category for the LMFIT leastsq minimizer.
Classes:
| Name | Description |
|---|---|
LmfitLeastsqMinimizer |
Persisted settings for the LMFIT leastsq minimizer. |
LmfitLeastsqMinimizer()
Persisted settings for the LMFIT leastsq minimizer.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
max_iterations |
IntegerDescriptor
|
Maximum solver iterations. |
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
max_iterations
property
writable
Maximum solver iterations.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
lsq_base
Behavior helpers for deterministic minimizer categories.
Classes:
| Name | Description |
|---|---|
LeastSquaresMinimizerBase |
Shared behavior for least-squares minimizer categories. |
LeastSquaresMinimizerBase()
Shared behavior for least-squares minimizer categories.
Methods:
| Name | Description |
|---|---|
show_supported |
Print supported types and mark the active one. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
max_iterations |
IntegerDescriptor
|
Maximum solver iterations. |
type |
str
|
Active factory tag for this category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
max_iterations
property
writable
Maximum solver iterations.
type
property
writable
Active factory tag for this category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
show_supported()
Print supported types and mark the active one.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
sequential_fit
Modules:
| Name | Description |
|---|---|
default |
Sequential-fit configuration category. |
factory |
Sequential-fit factory - delegates to |
Classes
Modules
default
Sequential-fit configuration category.
Stores persisted settings for directory-based sequential fitting.
Classes:
| Name | Description |
|---|---|
SequentialFit |
Persisted settings for sequential fitting. |
SequentialFit()
Persisted settings for sequential fitting.
Methods:
| Name | Description |
|---|---|
from_cif |
Populate this sequential-fit category from a CIF block. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
Attributes:
| Name | Type | Description |
|---|---|---|
data_dir |
StringDescriptor
|
Directory containing sequential-fit data files. |
file_pattern |
StringDescriptor
|
Glob pattern selecting sequential-fit files. |
max_workers |
StringDescriptor
|
Worker-count token for sequential fitting. |
chunk_size |
StringDescriptor
|
Chunk-size token for sequential fitting. |
reverse |
BoolDescriptor
|
Whether to process sequential-fit files in reverse. |
as_cif |
str
|
Return CIF representation of this sequential-fit category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
data_dir
property
writable
Directory containing sequential-fit data files.
file_pattern
property
writable
Glob pattern selecting sequential-fit files.
max_workers
property
writable
Worker-count token for sequential fitting.
chunk_size
property
writable
Chunk-size token for sequential fitting.
reverse
property
writable
Whether to process sequential-fit files in reverse.
as_cif
property
Return CIF representation of this sequential-fit category.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
from_cif(block, idx=0)
Populate this sequential-fit category from a CIF block.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
factory
Sequential-fit factory - delegates to FactoryBase.
Classes:
| Name | Description |
|---|---|
SequentialFitFactory |
Create sequential-fit category items by tag. |
SequentialFitFactory
Create sequential-fit category items by tag.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
sequential_fit_extract
Modules:
| Name | Description |
|---|---|
default |
Sequential-fit extract-rule configuration. |
factory |
Sequential-fit-extract factory - delegates to |
Classes
Modules
default
Sequential-fit extract-rule configuration.
Stores persisted rules for extracting diffrn metadata from sequential fit input files.
Classes:
| Name | Description |
|---|---|
SequentialFitExtractItem |
A single sequential-fit extract rule. |
SequentialFitExtractCollection |
Collection of :class: |
SequentialFitExtractItem()
A single sequential-fit extract rule.
Methods:
| Name | Description |
|---|---|
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
id |
StringDescriptor
|
Identifier for this extract rule. |
target |
StringDescriptor
|
Diffrn attribute updated by this extract rule. |
pattern |
StringDescriptor
|
Regex used to extract one numeric capture group. |
required |
BoolDescriptor
|
Whether this extract rule must match every file. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
parameters |
list
|
All GenericDescriptorBase instances on this item. |
as_cif |
str
|
Return CIF representation of this object. |
id
property
writable
Identifier for this extract rule.
target
property
writable
Diffrn attribute updated by this extract rule.
pattern
property
writable
Regex used to extract one numeric capture group.
required
property
writable
Whether this extract rule must match every file.
unique_name
property
Fully qualified name: datablock, category, entry.
parameters
property
All GenericDescriptorBase instances on this item.
as_cif
property
Return CIF representation of this object.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
SequentialFitExtractCollection()
Collection of :class:SequentialFitExtractItem items.
Methods:
| Name | Description |
|---|---|
create |
Create a validated sequential-fit extract rule. |
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print a summary of public attributes and contained items. |
__getitem__ |
Return an item by name or positional index. |
__setitem__ |
Insert or replace an item under the given identity key. |
__delitem__ |
Delete an item by key or raise |
__contains__ |
Check whether an item with the given key exists. |
__iter__ |
Iterate over items in insertion order. |
__len__ |
Return the number of items in the collection. |
remove |
Remove an item by its key. |
keys |
Yield keys for all items in insertion order. |
values |
Yield items in insertion order. |
items |
Yield |
from_cif |
Populate this collection from a CIF block. |
add |
Insert or replace a pre-built item into the collection. |
Attributes:
| Name | Type | Description |
|---|---|---|
unique_name |
str | None
|
Return None; collections have no unique name. |
parameters |
list
|
All parameters from all items in this collection. |
as_cif |
str
|
Return CIF representation of this object. |
names |
list[str | None]
|
List of all item keys in the collection. |
scalar_descriptors |
list
|
Collection-level descriptors serialized outside the loop. |
unique_name
property
Return None; collections have no unique name.
parameters
property
All parameters from all items in this collection.
as_cif
property
Return CIF representation of this object.
names
property
List of all item keys in the collection.
scalar_descriptors
property
Collection-level descriptors serialized outside the loop.
create(*, id, target, pattern, required=False)
Create a validated sequential-fit extract rule.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print a summary of public attributes and contained items.
__getitem__(key)
Return an item by name or positional index.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
key
|
str | int
|
Identity key (str) or zero-based positional index (int). |
required |
Returns:
| Type | Description |
|---|---|
GuardedBase
|
The item matching the given key or index. |
Raises:
| Type | Description |
|---|---|
TypeError
|
If key is neither |
__setitem__(name, item)
Insert or replace an item under the given identity key.
__delitem__(name)
Delete an item by key or raise KeyError if missing.
__contains__(name)
Check whether an item with the given key exists.
__iter__()
Iterate over items in insertion order.
__len__()
Return the number of items in the collection.
remove(name)
Remove an item by its key.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
name
|
str
|
Identity key of the item to remove. |
required |
keys()
Yield keys for all items in insertion order.
values()
Yield items in insertion order.
items()
Yield (key, item) pairs in insertion order.
from_cif(block)
Populate this collection from a CIF block.
add(item)
Insert or replace a pre-built item into the collection.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
item
|
object
|
A |
required |
factory
Sequential-fit-extract factory - delegates to FactoryBase.
Classes:
| Name | Description |
|---|---|
SequentialFitExtractFactory |
Create sequential-fit-extract collections by tag. |
SequentialFitExtractFactory
Create sequential-fit-extract collections by tag.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
software
Analysis software-provenance category exports.
Modules:
| Name | Description |
|---|---|
base |
Shared software-provenance role helpers. |
default |
Analysis software-provenance category. |
factory |
Factory for analysis software-provenance categories. |
Classes
Modules
base
Shared software-provenance role helpers.
Classes:
| Name | Description |
|---|---|
SoftwareRole |
Name, version, and URL for one software role. |
SoftwareRole(*, role_name, description)
Name, version, and URL for one software role.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
role_name
|
str
|
Role prefix used in persisted CIF item names. |
required |
description
|
str
|
Human-readable role description. |
required |
Methods:
| Name | Description |
|---|---|
__str__ |
Return the string representation of this object. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print a summary of public properties and methods. |
Attributes:
| Name | Type | Description |
|---|---|---|
name |
StringDescriptor
|
Software name. |
version |
StringDescriptor
|
Software version. |
url |
StringDescriptor
|
Software project URL. |
parameters |
list[StringDescriptor]
|
Descriptors owned by this software role. |
as_cif |
str
|
Return CIF representation of this software role. |
unique_name |
str
|
Fallback unique name: the class name. |
name
property
writable
Software name.
version
property
writable
Software version.
url
property
writable
Software project URL.
parameters
property
Descriptors owned by this software role.
as_cif
property
Return CIF representation of this software role.
unique_name
property
Fallback unique name: the class name.
__str__()
Return the string representation of this object.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print a summary of public properties and methods.
default
Analysis software-provenance category.
Classes:
| Name | Description |
|---|---|
Software |
Software-provenance snapshot for the latest successful fit. |
Software()
Software-provenance snapshot for the latest successful fit.
Methods:
| Name | Description |
|---|---|
__str__ |
Human-readable representation of this component. |
__repr__ |
Return the developer representation of this object. |
__getattr__ |
Raise a descriptive error for unknown attribute access. |
__setattr__ |
Set an attribute with access-control diagnostics. |
help |
Print parameters, other properties, and methods. |
from_cif |
Populate this item from a CIF block. |
Attributes:
| Name | Type | Description |
|---|---|---|
framework |
SoftwareRole
|
EasyDiffraction framework provenance. |
calculator |
SoftwareRole
|
Calculation-engine provenance. |
minimizer |
SoftwareRole
|
Minimization-engine provenance. |
timestamp |
StringDescriptor
|
UTC timestamp of the fit provenance snapshot. |
parameters |
list[StringDescriptor]
|
Descriptors owned by this software category. |
as_cif |
str
|
Return CIF representation of this software category. |
unique_name |
str
|
Fully qualified name: datablock, category, entry. |
framework
property
EasyDiffraction framework provenance.
calculator
property
Calculation-engine provenance.
minimizer
property
Minimization-engine provenance.
timestamp
property
writable
UTC timestamp of the fit provenance snapshot.
parameters
property
Descriptors owned by this software category.
as_cif
property
Return CIF representation of this software category.
unique_name
property
Fully qualified name: datablock, category, entry.
__str__()
Human-readable representation of this component.
__repr__()
Return the developer representation of this object.
__getattr__(key)
Raise a descriptive error for unknown attribute access.
__setattr__(key, value)
Set an attribute with access-control diagnostics.
help()
Print parameters, other properties, and methods.
from_cif(block, idx=0)
Populate this item from a CIF block.
factory
Factory for analysis software-provenance categories.
Classes:
| Name | Description |
|---|---|
SoftwareFactory |
Create software-provenance categories. |
SoftwareFactory
Create software-provenance categories.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
enums
Enumeration types used by analysis components.
Classes:
| Name | Description |
|---|---|
FitModeEnum |
Fitting mode for the analysis. |
FitResultKindEnum |
Persisted kind of the latest fit-result projection. |
FitCorrelationSourceEnum |
Source of a persisted fit-parameter correlation summary. |
Classes
FitModeEnum
Fitting mode for the analysis.
Methods:
| Name | Description |
|---|---|
default |
Return the default fit mode (SINGLE). |
description |
Return a human-readable description of this fit mode. |
Functions
default()
classmethod
Return the default fit mode (SINGLE).
description()
Return a human-readable description of this fit mode.
FitResultKindEnum
Persisted kind of the latest fit-result projection.
Methods:
| Name | Description |
|---|---|
default |
Return the default persisted fit-result kind. |
description |
Return a human-readable description of this fit-result kind. |
Functions
default()
classmethod
Return the default persisted fit-result kind.
description()
Return a human-readable description of this fit-result kind.
FitCorrelationSourceEnum
Source of a persisted fit-parameter correlation summary.
Methods:
| Name | Description |
|---|---|
default |
Return the default persisted correlation source. |
description |
Return a human-readable description of this correlation source. |
Functions
default()
classmethod
Return the default persisted correlation source.
description()
Return a human-readable description of this correlation source.
fit_helpers
Modules:
| Name | Description |
|---|---|
bayesian |
Bayesian fit result models and posterior data containers. |
metrics |
|
reporting |
|
tracking |
|
Classes
Modules
bayesian
Bayesian fit result models and posterior data containers.
Classes:
| Name | Description |
|---|---|
PosteriorPredictiveSummary |
Posterior predictive summaries for one experiment. |
PosteriorSamples |
Posterior samples and sample statistics from a Bayesian fit. |
BayesianFitResults |
Container for Bayesian fit results and posterior summaries. |
Functions:
| Name | Description |
|---|---|
posterior_predictive_cache_key |
Return the cache key for one posterior predictive summary. |
compute_convergence_diagnostics |
Compute convergence diagnostics from posterior samples. |
summarize_posterior_parameters |
Build posterior parameter summaries in EasyDiffraction order. |
standard_deviations_from_summaries |
Return posterior standard deviations in summary order. |
Classes
PosteriorPredictiveSummary(experiment_name, x_axis_name, x, best_sample_prediction, lower_95=None, upper_95=None, lower_68=None, upper_68=None, draws=None)
dataclass
Posterior predictive summaries for one experiment.
Attributes:
| Name | Type | Description |
|---|---|---|
experiment_name |
str
|
Experiment identifier. |
x_axis_name |
str
|
Name of the x-axis used for the predictive arrays. |
x |
np.ndarray
|
X-axis values for the predictive curves. |
best_sample_prediction |
np.ndarray
|
Prediction corresponding to the committed point estimate. |
lower_95 |
np.ndarray | None, default=None
|
Lower bound of the 95% credible interval. |
upper_95 |
np.ndarray | None, default=None
|
Upper bound of the 95% credible interval. |
lower_68 |
np.ndarray | None, default=None
|
Lower bound of the 68% credible interval. |
upper_68 |
np.ndarray | None, default=None
|
Upper bound of the 68% credible interval. |
draws |
np.ndarray | None, default=None
|
Optional capped predictive draws with shape |
PosteriorSamples(parameter_names, parameter_samples, log_posterior=None, draw_index=None)
dataclass
Posterior samples and sample statistics from a Bayesian fit.
Attributes:
| Name | Type | Description |
|---|---|---|
parameter_names |
list[str]
|
Parameter names in the preserved EasyDiffraction order. |
parameter_samples |
np.ndarray
|
Sample array with shape |
log_posterior |
np.ndarray | None, default=None
|
Log-posterior values with shape |
draw_index |
np.ndarray | None, default=None
|
Optional draw or generation indices associated with the first
axis of |
Methods:
| Name | Description |
|---|---|
flattened |
Return flattened posterior samples by parameter. |
validate_shapes |
Validate stored sample shapes. |
flattened()
Return flattened posterior samples by parameter.
Returns:
| Type | Description |
|---|---|
np.ndarray
|
Array with shape |
validate_shapes()
Validate stored sample shapes.
Returns:
| Type | Description |
|---|---|
tuple[int, int, int]
|
Tuple |
Raises:
| Type | Description |
|---|---|
ValueError
|
If the sample array is not 3-D, the parameter axis does not
match |
BayesianFitResults(*, success=False, parameters=None, reduced_chi_square=None, engine_result=None, starting_parameters=None, fitting_time=None, sampler_name='dream', point_estimate_name='best_sample', posterior_samples=None, posterior_parameter_summaries=None, posterior_predictive=None, posterior_distribution_caches=None, posterior_pair_caches=None, credible_interval_levels=DEFAULT_CI_LEVELS, sampler_settings=None, convergence_diagnostics=None, sampler_completed=False, best_log_posterior=None)
dataclass
Container for Bayesian fit results and posterior summaries.
Attributes:
| Name | Type | Description |
|---|---|---|
success |
bool, default=False
|
Whether the Bayesian fit produced usable posterior results. |
parameters |
list[object] | None, default=None
|
Final committed parameter objects. |
reduced_chi_square |
float | None, default=None
|
Reduced chi-square evaluated at the committed point estimate. |
engine_result |
object | None, default=None
|
Opaque backend result object. |
starting_parameters |
list[object] | None, default=None
|
Starting parameter objects or snapshots. |
fitting_time |
float | None, default=None
|
Total fitting time in seconds. |
sampler_name |
str, default='dream'
|
Sampler identifier. |
point_estimate_name |
str, default='best_sample'
|
Name of the point estimate committed back to the project. |
posterior_samples |
PosteriorSamples | None, default=None
|
Stored posterior samples. |
posterior_parameter_summaries |
SummaryList, default=None
|
Posterior summaries for each sampled parameter. |
posterior_predictive |
PredictiveMap, default=None
|
Posterior predictive summaries keyed by experiment name. |
posterior_distribution_caches |
ArrayPayloadMap, default=None
|
Cached posterior density arrays keyed by parameter name. |
posterior_pair_caches |
ArrayPayloadMap, default=None
|
Cached posterior pair-density arrays keyed by cache id. |
credible_interval_levels |
IntervalLevels, default=DEFAULT_CI_LEVELS
|
Interval levels available in the summaries. |
sampler_settings |
SettingsMap, default=None
|
Sampler settings recorded for reproducibility. |
convergence_diagnostics |
DiagnosticsMap, default=None
|
Convergence diagnostics and status metadata. |
sampler_completed |
bool, default=False
|
Whether the sampler completed a run and returned posterior data. |
best_log_posterior |
float | None, default=None
|
Best log-posterior value reported by the sampler. |
Methods:
| Name | Description |
|---|---|
__post_init__ |
Initialize inherited FitResults state and normalize containers. |
display_results |
Render a Bayesian fit summary with posterior diagnostics. |
__post_init__()
Initialize inherited FitResults state and normalize containers.
display_results(y_obs=None, y_calc=None, y_err=None, f_obs=None, f_calc=None)
Render a Bayesian fit summary with posterior diagnostics.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
y_obs
|
list[float] | None
|
Observed intensities for pattern R-factor metrics. |
None
|
y_calc
|
list[float] | None
|
Calculated intensities for pattern R-factor metrics. |
None
|
y_err
|
list[float] | None
|
Standard deviations of observed intensities for wR. |
None
|
f_obs
|
list[float] | None
|
Observed structure-factor magnitudes for Bragg R. |
None
|
f_calc
|
list[float] | None
|
Calculated structure-factor magnitudes for Bragg R. |
None
|
Functions
posterior_predictive_cache_key(experiment_name, x_axis_name, *, include_draws=True)
Return the cache key for one posterior predictive summary.
compute_convergence_diagnostics(posterior_samples)
Compute convergence diagnostics from posterior samples.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
posterior_samples
|
PosteriorSamples
|
Posterior samples container. |
required |
Returns:
| Type | Description |
|---|---|
dict[str, object]
|
Convergence metrics keyed by diagnostic name. |
summarize_posterior_parameters(parameter_names, posterior_samples, best_sample_values, parameter_display_names=None, convergence_diagnostics=None)
Build posterior parameter summaries in EasyDiffraction order.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
parameter_names
|
list[str]
|
Sampled parameter names in EasyDiffraction order. |
required |
posterior_samples
|
PosteriorSamples
|
Posterior sample container. |
required |
best_sample_values
|
np.ndarray
|
Best posterior sample values in the same order. |
required |
parameter_display_names
|
list[str] | None
|
Human-readable parameter names in the same order. |
None
|
convergence_diagnostics
|
dict[str, object] | None
|
Optional convergence diagnostics keyed by parameter name. |
None
|
Returns:
| Type | Description |
|---|---|
list[PosteriorParameterSummary]
|
Summary rows matching the input parameter order. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If the posterior sample array is incompatible with the parameter name list. |
standard_deviations_from_summaries(summaries)
Return posterior standard deviations in summary order.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
summaries
|
list[PosteriorParameterSummary]
|
Posterior summaries in parameter order. |
required |
Returns:
| Type | Description |
|---|---|
np.ndarray
|
Standard deviations in the same order. |
metrics
Functions:
| Name | Description |
|---|---|
calculate_r_factor |
Calculate the R-factor between observed and calculated data. |
calculate_weighted_r_factor |
Calculate weighted R-factor between observed and calculated data. |
calculate_rb_factor |
Calculate the Bragg R-factor between observed and calculated data. |
calculate_r_factor_squared |
Calculate the R-factor squared between observed and calculated data. |
calculate_reduced_chi_square |
Calculate the reduced chi-square statistic. |
get_reliability_inputs |
Collect observed and calculated data for reliability calculations. |
Classes
Functions
calculate_r_factor(y_obs, y_calc)
Calculate the R-factor between observed and calculated data.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
y_obs
|
np.ndarray
|
Observed data points. |
required |
y_calc
|
np.ndarray
|
Calculated data points. |
required |
Returns:
| Type | Description |
|---|---|
float
|
R-factor value. |
calculate_weighted_r_factor(y_obs, y_calc, weights)
Calculate weighted R-factor between observed and calculated data.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
y_obs
|
np.ndarray
|
Observed data points. |
required |
y_calc
|
np.ndarray
|
Calculated data points. |
required |
weights
|
np.ndarray
|
Weights for each data point. |
required |
Returns:
| Type | Description |
|---|---|
float
|
Weighted R-factor value. |
calculate_rb_factor(y_obs, y_calc)
Calculate the Bragg R-factor between observed and calculated data.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
y_obs
|
np.ndarray
|
Observed data points. |
required |
y_calc
|
np.ndarray
|
Calculated data points. |
required |
Returns:
| Type | Description |
|---|---|
float
|
Bragg R-factor value. |
calculate_r_factor_squared(y_obs, y_calc)
Calculate the R-factor squared between observed and calculated data.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
y_obs
|
np.ndarray
|
Observed data points. |
required |
y_calc
|
np.ndarray
|
Calculated data points. |
required |
Returns:
| Type | Description |
|---|---|
float
|
R-factor squared value. |
calculate_reduced_chi_square(residuals, num_parameters)
Calculate the reduced chi-square statistic.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
residuals
|
np.ndarray
|
Residuals between observed and calculated data. |
required |
num_parameters
|
int
|
Number of free parameters used in the model. |
required |
Returns:
| Type | Description |
|---|---|
float
|
Reduced chi-square value. |
get_reliability_inputs(structures, experiments)
Collect observed and calculated data for reliability calculations.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
structures
|
Structures
|
Collection of structures. |
required |
experiments
|
list[ExperimentBase]
|
List of experiments. |
required |
Returns:
| Type | Description |
|---|---|
np.ndarray
|
Observed values. |
np.ndarray
|
Calculated values. |
np.ndarray | None
|
Error values, or None if not available. |
reporting
Classes:
| Name | Description |
|---|---|
FitResults |
Container for results of a single optimization run. |
Classes
FitResults(*, success=False, parameters=None, reduced_chi_square=None, engine_result=None, starting_parameters=None, fitting_time=None, **kwargs)
Container for results of a single optimization run.
Holds success flag, chi-square metrics, iteration counts, timing, and parameter objects. Provides a printer to summarize key indicators and a table of fitted parameters.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
success
|
bool
|
Indicates if the fit was successful. |
False
|
parameters
|
list[object] | None
|
List of parameters used in the fit. |
None
|
reduced_chi_square
|
float | None
|
Reduced chi-square value of the fit. |
None
|
engine_result
|
object | None
|
Result from the fitting engine. |
None
|
starting_parameters
|
list[object] | None
|
Initial parameters for the fit. |
None
|
fitting_time
|
float | None
|
Time taken for the fitting process. |
None
|
**kwargs
|
object
|
Additional engine-specific fields. If |
{}
|
Methods:
| Name | Description |
|---|---|
display_results |
Render a human-readable summary of the fit. |
display_results(y_obs=None, y_calc=None, y_err=None, f_obs=None, f_calc=None)
Render a human-readable summary of the fit.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
y_obs
|
list[float] | None
|
Observed intensities for pattern R-factor metrics. |
None
|
y_calc
|
list[float] | None
|
Calculated intensities for pattern R-factor metrics. |
None
|
y_err
|
list[float] | None
|
Standard deviations of observed intensities for wR. |
None
|
f_obs
|
list[float] | None
|
Observed structure-factor magnitudes for Bragg R. |
None
|
f_calc
|
list[float] | None
|
Calculated structure-factor magnitudes for Bragg R. |
None
|
Functions
tracking
Classes:
| Name | Description |
|---|---|
SamplerProgressUpdate |
Normalized sampler progress payload forwarded by monitor hooks. |
FitProgressTracker |
Track and report reduced chi-square during optimization. |
Classes
SamplerProgressUpdate(iteration, total_iterations, phase, progress_percent, log_posterior, reduced_chi2, elapsed_time, force_report=False)
dataclass
Normalized sampler progress payload forwarded by monitor hooks.
FitProgressTracker()
Track and report reduced chi-square during optimization.
The tracker keeps iteration counters, remembers the best observed reduced chi-square and when it occurred, and can display progress as a table in notebooks or a text UI in terminals.
Methods:
| Name | Description |
|---|---|
reset |
Reset internal state before a new optimization run. |
track |
Update progress with current residuals and parameters. |
track_fit_progress |
Update fit progress from a backend iteration callback. |
track_sampler_progress |
Update progress from a sampler monitor. |
start_sampler_pre_processing |
Mark sampler setup so a status row appears on update. |
start_sampler_post_processing |
Switch the activity indicator to post-processing. |
start_timer |
Begin timing of a fit run. |
stop_timer |
Stop timing and store elapsed time for the run. |
start_tracking |
Initialize display and headers and announce the minimizer. |
add_tracking_info |
Append a formatted row to the progress display. |
finish_tracking |
Finalize progress display and print best result summary. |
Attributes:
| Name | Type | Description |
|---|---|---|
best_chi2 |
float | None
|
Best recorded reduced chi-square value or None. |
best_iteration |
int | None
|
Iteration index at which the best chi-square was observed. |
iteration |
int
|
Current iteration counter. |
fitting_time |
float | None
|
Elapsed time of the last run in seconds, if available. |
best_chi2
property
Best recorded reduced chi-square value or None.
best_iteration
property
Iteration index at which the best chi-square was observed.
iteration
property
Current iteration counter.
fitting_time
property
Elapsed time of the last run in seconds, if available.
reset()
Reset internal state before a new optimization run.
track(residuals, parameters)
Update progress with current residuals and parameters.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
residuals
|
np.ndarray
|
Residuals between measured and calculated data. |
required |
parameters
|
list[float]
|
Current free parameters being fitted. |
required |
Returns:
| Type | Description |
|---|---|
np.ndarray
|
Residuals unchanged, for optimizer consumption. |
track_fit_progress(*, iteration, reduced_chi2, elapsed_time)
Update fit progress from a backend iteration callback.
track_sampler_progress(update)
Update progress from a sampler monitor.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
update
|
SamplerProgressUpdate
|
Sampler iteration, phase, timing, and fit-quality payload. |
required |
start_sampler_pre_processing(*, total_iterations)
Mark sampler setup so a status row appears on update.
start_sampler_post_processing(*, log_posterior=None)
Switch the activity indicator to post-processing.
start_timer()
Begin timing of a fit run.
stop_timer()
Stop timing and store elapsed time for the run.
start_tracking(minimizer_name, *, mode=TRACKING_MODE_FIT)
Initialize display and headers and announce the minimizer.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
minimizer_name
|
str
|
Name of the minimizer used for the run. |
required |
mode
|
str
|
Tracking mode for the run. |
TRACKING_MODE_FIT
|
add_tracking_info(row)
Append a formatted row to the progress display.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
row
|
list[str]
|
Columns corresponding to the active tracking headers. |
required |
finish_tracking()
Finalize progress display and print best result summary.
Functions
fitting
Classes:
| Name | Description |
|---|---|
FitterFitOptions |
Execution options for one fitter run. |
Fitter |
Handles the fitting workflow using a pluggable minimizer. |
Classes
FitterFitOptions(use_physical_limits=False, random_seed=None, resume=False, extra_steps=None)
dataclass
Execution options for one fitter run.
Methods:
| Name | Description |
|---|---|
as_minimizer_options |
Return equivalent minimizer options for this fitter run. |
Functions
as_minimizer_options()
Return equivalent minimizer options for this fitter run.
Fitter(selection=MinimizerTypeEnum.default())
Handles the fitting workflow using a pluggable minimizer.
Methods:
| Name | Description |
|---|---|
fit |
Run the fitting process. |
Functions
fit(structures, experiments, weights=None, analysis=None, verbosity=VerbosityEnum.FULL, *, options=None)
Run the fitting process.
This method performs the optimization but does not display
results. Use :meth:show_fit_results on the Analysis object to
display the fit results after fitting is complete.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
structures
|
Structures
|
Collection of structures. |
required |
experiments
|
list[ExperimentBase]
|
List of experiments to fit. |
required |
weights
|
np.ndarray | None
|
Per-experiment weights as a 1-D array (length must match
experiments). When |
None
|
analysis
|
object
|
Optional Analysis object to update its categories during fitting. |
None
|
verbosity
|
VerbosityEnum
|
Console output verbosity. |
VerbosityEnum.FULL
|
options
|
FitterFitOptions | None
|
Execution options controlling limits, randomness and resume. |
None
|
Raises:
| Type | Description |
|---|---|
ValueError
|
If resume is requested without the same free parameter set used by the saved emcee chain. |
Functions
minimizers
Modules:
| Name | Description |
|---|---|
base |
|
bumps |
Minimizer using the bumps package. |
bumps_amoeba |
Bumps minimizer variant using the Nelder-Mead simplex method. |
bumps_de |
Bumps minimizer variant using the differential evolution method. |
bumps_dream |
Bumps minimizer variant using the DREAM sampler. |
bumps_lm |
Bumps minimizer variant using the Levenberg-Marquardt method. |
dfols |
|
emcee |
Minimizer using the emcee ensemble sampler. |
emcee_defaults |
Shared defaults for the emcee minimizer. |
enums |
Enumerations for minimizer types. |
factory |
Minimizer factory — delegates to |
lmfit |
|
lmfit_least_squares |
LMFIT minimizer variant using trust region reflective method. |
lmfit_leastsq |
LMFIT minimizer variant using the Levenberg-Marquardt (leastsq) method. |
Classes
Modules
base
Classes:
| Name | Description |
|---|---|
MinimizerFitOptions |
Execution options for one minimizer run. |
MinimizerBase |
Abstract base for concrete minimizers. |
Classes
MinimizerFitOptions(finalize_tracking=True, use_physical_limits=False, random_seed=None, resume=False, extra_steps=None)
dataclass
Execution options for one minimizer run.
MinimizerBase(name=None, method=None, max_iterations=None)
Abstract base for concrete minimizers.
Contract: - Subclasses must implement _prepare_solver_args,
_run_solver, _sync_result_to_parameters and
_check_success. - The fit method orchestrates the full
workflow and returns :class:FitResults.
Methods:
| Name | Description |
|---|---|
fit |
Run the full minimization workflow. |
Attributes:
| Name | Type | Description |
|---|---|---|
max_iterations |
int | None
|
User-facing iteration limit for the current minimizer. |
max_iterations
property
writable
User-facing iteration limit for the current minimizer.
fit(parameters, objective_function, verbosity=VerbosityEnum.FULL, *, options=None)
Run the full minimization workflow.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
parameters
|
list[object]
|
Free parameters to optimize. |
required |
objective_function
|
Callable[..., object]
|
Callable returning residuals for a given set of engine arguments. |
required |
verbosity
|
VerbosityEnum
|
Console output verbosity. |
VerbosityEnum.FULL
|
options
|
MinimizerFitOptions | None
|
Execution options controlling limits, randomness, resume, and tracker finalization. |
None
|
Returns:
| Type | Description |
|---|---|
FitResults
|
FitResults with success flag, best chi2 and timing. |
Raises:
| Type | Description |
|---|---|
NotImplementedError
|
If resume is requested for a minimizer that does not support it. |
bumps
Minimizer using the bumps package.
Classes:
| Name | Description |
|---|---|
BumpsMinimizer |
Minimizer using the BUMPS package. |
Classes
BumpsMinimizer(name=MinimizerTypeEnum.BUMPS, method=DEFAULT_METHOD, max_iterations=DEFAULT_MAX_ITERATIONS)
Minimizer using the BUMPS package.
Methods:
| Name | Description |
|---|---|
fit |
Run the full minimization workflow. |
Attributes:
| Name | Type | Description |
|---|---|---|
max_iterations |
int | None
|
User-facing iteration limit for the current minimizer. |
max_iterations
property
writable
User-facing iteration limit for the current minimizer.
fit(parameters, objective_function, verbosity=VerbosityEnum.FULL, *, options=None)
Run the full minimization workflow.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
parameters
|
list[object]
|
Free parameters to optimize. |
required |
objective_function
|
Callable[..., object]
|
Callable returning residuals for a given set of engine arguments. |
required |
verbosity
|
VerbosityEnum
|
Console output verbosity. |
VerbosityEnum.FULL
|
options
|
MinimizerFitOptions | None
|
Execution options controlling limits, randomness, resume, and tracker finalization. |
None
|
Returns:
| Type | Description |
|---|---|
FitResults
|
FitResults with success flag, best chi2 and timing. |
Raises:
| Type | Description |
|---|---|
NotImplementedError
|
If resume is requested for a minimizer that does not support it. |
bumps_amoeba
Bumps minimizer variant using the Nelder-Mead simplex method.
Classes:
| Name | Description |
|---|---|
BumpsAmoebaMinimizer |
Bumps minimizer using the Nelder-Mead simplex method. |
Classes
BumpsAmoebaMinimizer(name=MinimizerTypeEnum.BUMPS_AMOEBA, method=DEFAULT_METHOD, max_iterations=DEFAULT_MAX_ITERATIONS)
Bumps minimizer using the Nelder-Mead simplex method.
Methods:
| Name | Description |
|---|---|
fit |
Run the full minimization workflow. |
Attributes:
| Name | Type | Description |
|---|---|---|
max_iterations |
int | None
|
User-facing iteration limit for the current minimizer. |
max_iterations
property
writable
User-facing iteration limit for the current minimizer.
fit(parameters, objective_function, verbosity=VerbosityEnum.FULL, *, options=None)
Run the full minimization workflow.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
parameters
|
list[object]
|
Free parameters to optimize. |
required |
objective_function
|
Callable[..., object]
|
Callable returning residuals for a given set of engine arguments. |
required |
verbosity
|
VerbosityEnum
|
Console output verbosity. |
VerbosityEnum.FULL
|
options
|
MinimizerFitOptions | None
|
Execution options controlling limits, randomness, resume, and tracker finalization. |
None
|
Returns:
| Type | Description |
|---|---|
FitResults
|
FitResults with success flag, best chi2 and timing. |
Raises:
| Type | Description |
|---|---|
NotImplementedError
|
If resume is requested for a minimizer that does not support it. |
bumps_de
Bumps minimizer variant using the differential evolution method.
Classes:
| Name | Description |
|---|---|
BumpsDEMinimizer |
Bumps minimizer using the differential evolution method. |
Classes
BumpsDEMinimizer(name=MinimizerTypeEnum.BUMPS_DE, method=DEFAULT_METHOD, max_iterations=DEFAULT_MAX_ITERATIONS)
Bumps minimizer using the differential evolution method.
Methods:
| Name | Description |
|---|---|
fit |
Run the full minimization workflow. |
Attributes:
| Name | Type | Description |
|---|---|---|
max_iterations |
int | None
|
User-facing iteration limit for the current minimizer. |
max_iterations
property
writable
User-facing iteration limit for the current minimizer.
fit(parameters, objective_function, verbosity=VerbosityEnum.FULL, *, options=None)
Run the full minimization workflow.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
parameters
|
list[object]
|
Free parameters to optimize. |
required |
objective_function
|
Callable[..., object]
|
Callable returning residuals for a given set of engine arguments. |
required |
verbosity
|
VerbosityEnum
|
Console output verbosity. |
VerbosityEnum.FULL
|
options
|
MinimizerFitOptions | None
|
Execution options controlling limits, randomness, resume, and tracker finalization. |
None
|
Returns:
| Type | Description |
|---|---|
FitResults
|
FitResults with success flag, best chi2 and timing. |
Raises:
| Type | Description |
|---|---|
NotImplementedError
|
If resume is requested for a minimizer that does not support it. |
bumps_dream
Bumps minimizer variant using the DREAM sampler.
Classes:
| Name | Description |
|---|---|
BumpsDreamMinimizer |
Bumps minimizer using the DREAM Bayesian sampler. |
Classes
BumpsDreamMinimizer(name=MinimizerTypeEnum.BUMPS_DREAM, method=DEFAULT_METHOD, max_iterations=DEFAULT_MAX_ITERATIONS)
Bumps minimizer using the DREAM Bayesian sampler.
Methods:
| Name | Description |
|---|---|
fit |
Run the full minimization workflow. |
Attributes:
| Name | Type | Description |
|---|---|---|
max_iterations |
int
|
DREAM exposes sampler length through |
steps |
int
|
Number of DREAM generations retained after burn-in. |
burn |
int | None
|
Explicit DREAM burn-in generations or |
thin |
int
|
DREAM thinning interval. |
pop |
int
|
DREAM population multiplier. |
parallel |
int
|
DREAM parallel worker count; |
init |
DreamPopulationInitializationEnum
|
DREAM population initializer. |
max_iterations
property
writable
DREAM exposes sampler length through steps instead.
steps
property
writable
Number of DREAM generations retained after burn-in.
burn
property
writable
Explicit DREAM burn-in generations or None for auto.
thin
property
writable
DREAM thinning interval.
pop
property
writable
DREAM population multiplier.
parallel
property
writable
DREAM parallel worker count; 0 uses all CPUs.
init
property
writable
DREAM population initializer.
fit(parameters, objective_function, verbosity=VerbosityEnum.FULL, *, options=None)
Run the full minimization workflow.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
parameters
|
list[object]
|
Free parameters to optimize. |
required |
objective_function
|
Callable[..., object]
|
Callable returning residuals for a given set of engine arguments. |
required |
verbosity
|
VerbosityEnum
|
Console output verbosity. |
VerbosityEnum.FULL
|
options
|
MinimizerFitOptions | None
|
Execution options controlling limits, randomness, resume, and tracker finalization. |
None
|
Returns:
| Type | Description |
|---|---|
FitResults
|
FitResults with success flag, best chi2 and timing. |
Raises:
| Type | Description |
|---|---|
NotImplementedError
|
If resume is requested for a minimizer that does not support it. |
Functions
bumps_lm
Bumps minimizer variant using the Levenberg-Marquardt method.
Classes:
| Name | Description |
|---|---|
BumpsLmMinimizer |
Bumps minimizer explicitly using the Levenberg-Marquardt method. |
Classes
BumpsLmMinimizer(name=MinimizerTypeEnum.BUMPS_LM, method=DEFAULT_METHOD, max_iterations=DEFAULT_MAX_ITERATIONS)
Bumps minimizer explicitly using the Levenberg-Marquardt method.
Methods:
| Name | Description |
|---|---|
fit |
Run the full minimization workflow. |
Attributes:
| Name | Type | Description |
|---|---|---|
max_iterations |
int | None
|
User-facing iteration limit for the current minimizer. |
max_iterations
property
writable
User-facing iteration limit for the current minimizer.
fit(parameters, objective_function, verbosity=VerbosityEnum.FULL, *, options=None)
Run the full minimization workflow.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
parameters
|
list[object]
|
Free parameters to optimize. |
required |
objective_function
|
Callable[..., object]
|
Callable returning residuals for a given set of engine arguments. |
required |
verbosity
|
VerbosityEnum
|
Console output verbosity. |
VerbosityEnum.FULL
|
options
|
MinimizerFitOptions | None
|
Execution options controlling limits, randomness, resume, and tracker finalization. |
None
|
Returns:
| Type | Description |
|---|---|
FitResults
|
FitResults with success flag, best chi2 and timing. |
Raises:
| Type | Description |
|---|---|
NotImplementedError
|
If resume is requested for a minimizer that does not support it. |
dfols
Classes:
| Name | Description |
|---|---|
DfolsMinimizer |
Minimizer using DFO-LS (derivative-free least-squares). |
Classes
DfolsMinimizer(name=MinimizerTypeEnum.DFOLS, max_iterations=DEFAULT_MAX_ITERATIONS, **kwargs)
Minimizer using DFO-LS (derivative-free least-squares).
Methods:
| Name | Description |
|---|---|
fit |
Run the full minimization workflow. |
Attributes:
| Name | Type | Description |
|---|---|---|
max_iterations |
int | None
|
User-facing iteration limit for the current minimizer. |
max_iterations
property
writable
User-facing iteration limit for the current minimizer.
fit(parameters, objective_function, verbosity=VerbosityEnum.FULL, *, options=None)
Run the full minimization workflow.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
parameters
|
list[object]
|
Free parameters to optimize. |
required |
objective_function
|
Callable[..., object]
|
Callable returning residuals for a given set of engine arguments. |
required |
verbosity
|
VerbosityEnum
|
Console output verbosity. |
VerbosityEnum.FULL
|
options
|
MinimizerFitOptions | None
|
Execution options controlling limits, randomness, resume, and tracker finalization. |
None
|
Returns:
| Type | Description |
|---|---|
FitResults
|
FitResults with success flag, best chi2 and timing. |
Raises:
| Type | Description |
|---|---|
NotImplementedError
|
If resume is requested for a minimizer that does not support it. |
emcee
Minimizer using the emcee ensemble sampler.
Classes:
| Name | Description |
|---|---|
EmceeMinimizer |
emcee affine-invariant ensemble Bayesian sampler. |
Classes
EmceeMinimizer(name=MinimizerTypeEnum.EMCEE, method=DEFAULT_METHOD, max_iterations=DEFAULT_NSTEPS)
emcee affine-invariant ensemble Bayesian sampler.
Methods:
| Name | Description |
|---|---|
fit |
Run emcee sampling and return Bayesian fit results. |
Attributes:
| Name | Type | Description |
|---|---|---|
nsteps |
int
|
Number of emcee steps to run per walker. |
nburn |
int
|
Number of initial emcee steps discarded as burn-in. |
thin |
int
|
Emcee thinning interval. |
nwalkers |
int
|
Number of emcee walkers. |
parallel_workers |
int
|
Worker count; |
initialization_method |
InitializationMethodEnum
|
Emcee walker initialization method. |
proposal_moves |
str
|
Emcee proposal move name. |
max_iterations |
int | None
|
User-facing iteration limit for the current minimizer. |
nsteps
property
writable
Number of emcee steps to run per walker.
nburn
property
writable
Number of initial emcee steps discarded as burn-in.
thin
property
writable
Emcee thinning interval.
nwalkers
property
writable
Number of emcee walkers.
parallel_workers
property
writable
Worker count; 0 asks for all CPUs and 1 runs serially.
initialization_method
property
writable
Emcee walker initialization method.
proposal_moves
property
writable
Emcee proposal move name.
max_iterations
property
writable
User-facing iteration limit for the current minimizer.
fit(parameters, objective_function, verbosity=VerbosityEnum.FULL, *, options=None)
Run emcee sampling and return Bayesian fit results.
Functions
emcee_defaults
Shared defaults for the emcee minimizer.
Classes
enums
Enumerations for minimizer types.
Classes:
| Name | Description |
|---|---|
MinimizerTypeEnum |
Supported minimizer types. |
InitializationMethodEnum |
Supported Bayesian sampler initialization methods. |
DreamPopulationInitializationEnum |
Supported DREAM population initializers. |
Classes
MinimizerTypeEnum
Supported minimizer types.
Methods:
| Name | Description |
|---|---|
default |
Return the default minimizer type. |
description |
Return a human-readable description of this minimizer type. |
default()
classmethod
Return the default minimizer type.
description()
Return a human-readable description of this minimizer type.
InitializationMethodEnum
Supported Bayesian sampler initialization methods.
DreamPopulationInitializationEnum
Supported DREAM population initializers.
factory
Minimizer factory — delegates to FactoryBase.
Classes:
| Name | Description |
|---|---|
MinimizerFactory |
Factory for creating minimizer instances. |
Classes
MinimizerFactory
Factory for creating minimizer instances.
Methods:
| Name | Description |
|---|---|
__init_subclass__ |
Give each subclass its own independent registry and rules. |
register |
Class decorator to register a concrete class. |
supported_tags |
Return list of all supported tags. |
default_tag |
Resolve the default tag for a given experimental context. |
create |
Instantiate a registered class by tag. |
create_default_for |
Instantiate the default class for a given context. |
supported_for |
Return classes matching conditions and/or calculator. |
show_supported |
Pretty-print a table of supported types. |
__init_subclass__(**kwargs)
Give each subclass its own independent registry and rules.
register(klass)
classmethod
Class decorator to register a concrete class.
Usage::
@SomeFactory.register class MyClass(SomeBase): type_info = TypeInfo(...)
Returns the class unmodified.
supported_tags()
classmethod
Return list of all supported tags.
default_tag(**conditions)
classmethod
Resolve the default tag for a given experimental context.
Uses largest-subset matching: the rule whose key is the
biggest subset of the given conditions wins. A rule with an
empty key (frozenset()) acts as a universal fallback.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values, e.g.
|
{}
|
Returns:
| Type | Description |
|---|---|
str
|
The resolved default tag string. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If no rule matches the given conditions. |
create(tag, **kwargs)
classmethod
Instantiate a registered class by tag.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
tag
|
str
|
|
required |
**kwargs
|
object
|
Forwarded to the class constructor. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the registered class. |
Raises:
| Type | Description |
|---|---|
ValueError
|
If tag is not in the registry. |
create_default_for(**conditions)
classmethod
Instantiate the default class for a given context.
Combines default_tag(**conditions) with create(tag).
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
**conditions
|
object
|
Experimental-axis values. |
{}
|
Returns:
| Type | Description |
|---|---|
object
|
A new instance of the default class. |
supported_for(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Return classes matching conditions and/or calculator.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
Returns:
| Type | Description |
|---|---|
list[type]
|
Classes matching the given conditions. |
show_supported(*, calculator=None, sample_form=None, scattering_type=None, beam_mode=None, radiation_probe=None)
classmethod
Pretty-print a table of supported types.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
calculator
|
object
|
Optional |
None
|
sample_form
|
object
|
Optional |
None
|
scattering_type
|
object
|
Optional |
None
|
beam_mode
|
object
|
Optional |
None
|
radiation_probe
|
object
|
Optional |
None
|
lmfit
Classes:
| Name | Description |
|---|---|
LmfitMinimizer |
Minimizer using the lmfit package. |
Classes
LmfitMinimizer(name=MinimizerTypeEnum.LMFIT, method=DEFAULT_METHOD, max_iterations=DEFAULT_MAX_ITERATIONS)
Minimizer using the lmfit package.
Methods:
| Name | Description |
|---|---|
fit |
Run the full minimization workflow. |
Attributes:
| Name | Type | Description |
|---|---|---|
max_iterations |
int | None
|
User-facing iteration limit for the current minimizer. |
max_iterations
property
writable
User-facing iteration limit for the current minimizer.
fit(parameters, objective_function, verbosity=VerbosityEnum.FULL, *, options=None)
Run the full minimization workflow.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
parameters
|
list[object]
|
Free parameters to optimize. |
required |
objective_function
|
Callable[..., object]
|
Callable returning residuals for a given set of engine arguments. |
required |
verbosity
|
VerbosityEnum
|
Console output verbosity. |
VerbosityEnum.FULL
|
options
|
MinimizerFitOptions | None
|
Execution options controlling limits, randomness, resume, and tracker finalization. |
None
|
Returns:
| Type | Description |
|---|---|
FitResults
|
FitResults with success flag, best chi2 and timing. |
Raises:
| Type | Description |
|---|---|
NotImplementedError
|
If resume is requested for a minimizer that does not support it. |
lmfit_least_squares
LMFIT minimizer variant using trust region reflective method.
Classes:
| Name | Description |
|---|---|
LmfitLeastSquaresMinimizer |
LMFIT minimizer using SciPy's trust region reflective algorithm. |
Classes
LmfitLeastSquaresMinimizer(name=MinimizerTypeEnum.LMFIT_LEAST_SQUARES, method=DEFAULT_METHOD, max_iterations=DEFAULT_MAX_ITERATIONS)
LMFIT minimizer using SciPy's trust region reflective algorithm.
Methods:
| Name | Description |
|---|---|
fit |
Run the full minimization workflow. |
Attributes:
| Name | Type | Description |
|---|---|---|
max_iterations |
int | None
|
User-facing iteration limit for the current minimizer. |
max_iterations
property
writable
User-facing iteration limit for the current minimizer.
fit(parameters, objective_function, verbosity=VerbosityEnum.FULL, *, options=None)
Run the full minimization workflow.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
parameters
|
list[object]
|
Free parameters to optimize. |
required |
objective_function
|
Callable[..., object]
|
Callable returning residuals for a given set of engine arguments. |
required |
verbosity
|
VerbosityEnum
|
Console output verbosity. |
VerbosityEnum.FULL
|
options
|
MinimizerFitOptions | None
|
Execution options controlling limits, randomness, resume, and tracker finalization. |
None
|
Returns:
| Type | Description |
|---|---|
FitResults
|
FitResults with success flag, best chi2 and timing. |
Raises:
| Type | Description |
|---|---|
NotImplementedError
|
If resume is requested for a minimizer that does not support it. |
lmfit_leastsq
LMFIT minimizer variant using the Levenberg-Marquardt (leastsq) method.
Classes:
| Name | Description |
|---|---|
LmfitLeastsqMinimizer |
LMFIT minimizer explicitly using the Levenberg-Marquardt method. |
Classes
LmfitLeastsqMinimizer(name=MinimizerTypeEnum.LMFIT_LEASTSQ, method=DEFAULT_METHOD, max_iterations=DEFAULT_MAX_ITERATIONS)
LMFIT minimizer explicitly using the Levenberg-Marquardt method.
Methods:
| Name | Description |
|---|---|
fit |
Run the full minimization workflow. |
Attributes:
| Name | Type | Description |
|---|---|---|
max_iterations |
int | None
|
User-facing iteration limit for the current minimizer. |
max_iterations
property
writable
User-facing iteration limit for the current minimizer.
fit(parameters, objective_function, verbosity=VerbosityEnum.FULL, *, options=None)
Run the full minimization workflow.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
parameters
|
list[object]
|
Free parameters to optimize. |
required |
objective_function
|
Callable[..., object]
|
Callable returning residuals for a given set of engine arguments. |
required |
verbosity
|
VerbosityEnum
|
Console output verbosity. |
VerbosityEnum.FULL
|
options
|
MinimizerFitOptions | None
|
Execution options controlling limits, randomness, resume, and tracker finalization. |
None
|
Returns:
| Type | Description |
|---|---|
FitResults
|
FitResults with success flag, best chi2 and timing. |
Raises:
| Type | Description |
|---|---|
NotImplementedError
|
If resume is requested for a minimizer that does not support it. |
sequential
Sequential fitting infrastructure: template, worker, CSV, recovery.
Classes:
| Name | Description |
|---|---|
SequentialFitExtractRule |
Picklable sequential-fit extract rule for worker execution. |
SequentialFitTemplate |
Snapshot of everything a worker needs to recreate and fit a project. |
SequentialProgressState |
Mutable live progress rows for sequential fitting. |
SequentialProgressContext |
Mutable sequential-fit progress handles and state. |
SequentialRunPlan |
Resolved sequential-fit inputs and bookkeeping. |
Functions:
| Name | Description |
|---|---|
fit_sequential |
Run sequential fitting over all data files in a directory. |
Classes
SequentialFitExtractRule(id, field_name, pattern, required)
dataclass
Picklable sequential-fit extract rule for worker execution.
SequentialFitTemplate(structure_cif, experiment_cif, initial_params, free_param_unique_names, alias_defs, constraint_defs, constraints_enabled, minimizer_tag, calculator_tag, diffrn_extract_rules, diffrn_field_names)
dataclass
Snapshot of everything a worker needs to recreate and fit a project.
All fields are plain Python types (str, dict, list) so that the
template can be pickled for ProcessPoolExecutor.
SequentialProgressState(chunk_rows, file_rows)
dataclass
Mutable live progress rows for sequential fitting.
SequentialProgressContext(verbosity, state, indicator=None)
dataclass
Mutable sequential-fit progress handles and state.
SequentialRunPlan(verbosity, template, csv_path, header, remaining, chunks, max_workers, processed_count)
dataclass
Resolved sequential-fit inputs and bookkeeping.
Functions
fit_sequential(analysis, data_dir, max_workers=1, chunk_size=None, file_pattern='*', *, reverse=False)
Run sequential fitting over all data files in a directory.
Parameters:
| Name | Type | Description | Default |
|---|---|---|---|
analysis
|
object
|
The |
required |
data_dir
|
str
|
Path to directory containing data files. |
required |
max_workers
|
int | str
|
Number of parallel worker processes. |
1
|
chunk_size
|
int | None
|
Files per chunk. Default |
None
|
file_pattern
|
str
|
Glob pattern to filter files in data_dir. |
'*'
|
reverse
|
bool
|
When |
False
|